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Novel insights into plasma biomarker candidates in patients with chronic mountain sickness based on proteomics

Chronic mountain sickness (CMS) is a progressive incapacitating syndrome induced by lifelong exposure to hypoxia. In the present study, proteomic analysis was used to identify the differentially expressed proteins (DEPs) and then evaluate the potential plasma biomarkers between CMS and non-CMS group...

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Autores principales: Zhang, Peili, Li, Zhanquan, Yang, Faman, Ji, Linhua, Yang, Yingzhong, Liu, Chuanchuan, Liu, Huihui, Ma, Jie, Liu, Jie, Dang, Zhancui, Wang, Shengyan, Ge, Rili, Cui, Sen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Portland Press Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7816071/
https://www.ncbi.nlm.nih.gov/pubmed/33393624
http://dx.doi.org/10.1042/BSR20202219
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author Zhang, Peili
Li, Zhanquan
Yang, Faman
Ji, Linhua
Yang, Yingzhong
Liu, Chuanchuan
Liu, Huihui
Ma, Jie
Liu, Jie
Dang, Zhancui
Wang, Shengyan
Ge, Rili
Cui, Sen
author_facet Zhang, Peili
Li, Zhanquan
Yang, Faman
Ji, Linhua
Yang, Yingzhong
Liu, Chuanchuan
Liu, Huihui
Ma, Jie
Liu, Jie
Dang, Zhancui
Wang, Shengyan
Ge, Rili
Cui, Sen
author_sort Zhang, Peili
collection PubMed
description Chronic mountain sickness (CMS) is a progressive incapacitating syndrome induced by lifelong exposure to hypoxia. In the present study, proteomic analysis was used to identify the differentially expressed proteins (DEPs) and then evaluate the potential plasma biomarkers between CMS and non-CMS groups. A total of 145 DEPs were detected in CMS Han Chinese people who live in the plateau (CMS-HPu), among which 89 were significantly up-regulated and 56 were significantly down-regulated. GO enrichment analysis showed that various biological processes were enriched, including the hydrogen peroxide metabolic/catabolic process, reactive oxygen species (ROS) metabolic, and acute inflammatory response. Protein–protein interaction analysis showed that antioxidant activity, the hydrogen peroxide catabolic process and peroxidase activity were primarily mapped in interaction proteins. Nine modules showed significantly clustering based on WGCNA analysis, with two being the most significant, and GO analysis showed that proteins of both modules were primarily enriched in oxidative stress-related biological processes. Four DEPs increased in CMS patients were evaluated as the candidate biomarkers, and three showed significant AUC: hemoglobin β chain (HB-β), thioredoxin-1 (TRX1), and phosphoglycerate kinase 1 (PGK1). The present study provides insights into the pathogenesis of CMS and further evaluates the potentially biomarkers for its prevention and treatment of it.
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spelling pubmed-78160712021-02-04 Novel insights into plasma biomarker candidates in patients with chronic mountain sickness based on proteomics Zhang, Peili Li, Zhanquan Yang, Faman Ji, Linhua Yang, Yingzhong Liu, Chuanchuan Liu, Huihui Ma, Jie Liu, Jie Dang, Zhancui Wang, Shengyan Ge, Rili Cui, Sen Biosci Rep Bioinformatics Chronic mountain sickness (CMS) is a progressive incapacitating syndrome induced by lifelong exposure to hypoxia. In the present study, proteomic analysis was used to identify the differentially expressed proteins (DEPs) and then evaluate the potential plasma biomarkers between CMS and non-CMS groups. A total of 145 DEPs were detected in CMS Han Chinese people who live in the plateau (CMS-HPu), among which 89 were significantly up-regulated and 56 were significantly down-regulated. GO enrichment analysis showed that various biological processes were enriched, including the hydrogen peroxide metabolic/catabolic process, reactive oxygen species (ROS) metabolic, and acute inflammatory response. Protein–protein interaction analysis showed that antioxidant activity, the hydrogen peroxide catabolic process and peroxidase activity were primarily mapped in interaction proteins. Nine modules showed significantly clustering based on WGCNA analysis, with two being the most significant, and GO analysis showed that proteins of both modules were primarily enriched in oxidative stress-related biological processes. Four DEPs increased in CMS patients were evaluated as the candidate biomarkers, and three showed significant AUC: hemoglobin β chain (HB-β), thioredoxin-1 (TRX1), and phosphoglycerate kinase 1 (PGK1). The present study provides insights into the pathogenesis of CMS and further evaluates the potentially biomarkers for its prevention and treatment of it. Portland Press Ltd. 2021-01-19 /pmc/articles/PMC7816071/ /pubmed/33393624 http://dx.doi.org/10.1042/BSR20202219 Text en © 2021 The Author(s). https://creativecommons.org/licenses/by/4.0/ This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Bioinformatics
Zhang, Peili
Li, Zhanquan
Yang, Faman
Ji, Linhua
Yang, Yingzhong
Liu, Chuanchuan
Liu, Huihui
Ma, Jie
Liu, Jie
Dang, Zhancui
Wang, Shengyan
Ge, Rili
Cui, Sen
Novel insights into plasma biomarker candidates in patients with chronic mountain sickness based on proteomics
title Novel insights into plasma biomarker candidates in patients with chronic mountain sickness based on proteomics
title_full Novel insights into plasma biomarker candidates in patients with chronic mountain sickness based on proteomics
title_fullStr Novel insights into plasma biomarker candidates in patients with chronic mountain sickness based on proteomics
title_full_unstemmed Novel insights into plasma biomarker candidates in patients with chronic mountain sickness based on proteomics
title_short Novel insights into plasma biomarker candidates in patients with chronic mountain sickness based on proteomics
title_sort novel insights into plasma biomarker candidates in patients with chronic mountain sickness based on proteomics
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7816071/
https://www.ncbi.nlm.nih.gov/pubmed/33393624
http://dx.doi.org/10.1042/BSR20202219
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