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Molecular Understanding of Homogeneous Nucleation of CO(2) Hydrates Using Transition Path Sampling
[Image: see text] Carbon dioxide hydrate is a solid built from hydrogen-bond stabilized water cages that encapsulate individual CO(2) molecules. As potential candidates for reducing greenhouse gases, hydrates have attracted attention from both the industry and scientific community. Under high pressu...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7816195/ https://www.ncbi.nlm.nih.gov/pubmed/33379869 http://dx.doi.org/10.1021/acs.jpcb.0c09915 |
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author | Arjun, A. Bolhuis, P. G. |
author_facet | Arjun, A. Bolhuis, P. G. |
author_sort | Arjun, A. |
collection | PubMed |
description | [Image: see text] Carbon dioxide hydrate is a solid built from hydrogen-bond stabilized water cages that encapsulate individual CO(2) molecules. As potential candidates for reducing greenhouse gases, hydrates have attracted attention from both the industry and scientific community. Under high pressure and low temperature, hydrates are formed spontaneously from a mixture of CO(2) and water via nucleation and growth. Yet, for moderate undercooling, i.e., moderate supersaturation, studying hydrate formation with molecular simulations is very challenging due to the high nucleation barriers involved. We investigate the homogeneous nucleation mechanism of CO(2) hydrate as a function of temperature using transition path sampling (TPS), which generates ensembles of unbiased dynamical trajectories across the high barrier between the liquid and solid states. The resulting path ensembles reveal that at high driving force (low temperature), amorphous structures are predominantly formed, with 4(1)5(10)6(2) cages being the most abundant. With increasing temperature, the nucleation mechanism changes, and 5(12)6(2) becomes the most abundant cage type, giving rise to the crystalline sI structure. Reaction coordinate analysis can reveal the most important collective variable involved in the mechanism. With increasing temperature, we observe a shift from a single feature (size of the nucleus) to a 2-dimensional (size and cage type) variable as the salient ingredient of the reaction coordinate, and then back to only the nucleus size. This finding is in line with the underlying shift from an amorphous to a crystalline nucleation channel. Modeling such complex phase transformations using transition path sampling gives unbiased insight into the molecular mechanisms toward different polymorphs, and how these are determined by thermodynamics and kinetics. This study will be beneficial for researchers aiming to produce such hydrates with different polymorphic forms. |
format | Online Article Text |
id | pubmed-7816195 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-78161952021-01-21 Molecular Understanding of Homogeneous Nucleation of CO(2) Hydrates Using Transition Path Sampling Arjun, A. Bolhuis, P. G. J Phys Chem B [Image: see text] Carbon dioxide hydrate is a solid built from hydrogen-bond stabilized water cages that encapsulate individual CO(2) molecules. As potential candidates for reducing greenhouse gases, hydrates have attracted attention from both the industry and scientific community. Under high pressure and low temperature, hydrates are formed spontaneously from a mixture of CO(2) and water via nucleation and growth. Yet, for moderate undercooling, i.e., moderate supersaturation, studying hydrate formation with molecular simulations is very challenging due to the high nucleation barriers involved. We investigate the homogeneous nucleation mechanism of CO(2) hydrate as a function of temperature using transition path sampling (TPS), which generates ensembles of unbiased dynamical trajectories across the high barrier between the liquid and solid states. The resulting path ensembles reveal that at high driving force (low temperature), amorphous structures are predominantly formed, with 4(1)5(10)6(2) cages being the most abundant. With increasing temperature, the nucleation mechanism changes, and 5(12)6(2) becomes the most abundant cage type, giving rise to the crystalline sI structure. Reaction coordinate analysis can reveal the most important collective variable involved in the mechanism. With increasing temperature, we observe a shift from a single feature (size of the nucleus) to a 2-dimensional (size and cage type) variable as the salient ingredient of the reaction coordinate, and then back to only the nucleus size. This finding is in line with the underlying shift from an amorphous to a crystalline nucleation channel. Modeling such complex phase transformations using transition path sampling gives unbiased insight into the molecular mechanisms toward different polymorphs, and how these are determined by thermodynamics and kinetics. This study will be beneficial for researchers aiming to produce such hydrates with different polymorphic forms. American Chemical Society 2020-12-31 2021-01-14 /pmc/articles/PMC7816195/ /pubmed/33379869 http://dx.doi.org/10.1021/acs.jpcb.0c09915 Text en © 2020 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes. |
spellingShingle | Arjun, A. Bolhuis, P. G. Molecular Understanding of Homogeneous Nucleation of CO(2) Hydrates Using Transition Path Sampling |
title | Molecular Understanding of Homogeneous Nucleation
of CO(2) Hydrates Using Transition Path Sampling |
title_full | Molecular Understanding of Homogeneous Nucleation
of CO(2) Hydrates Using Transition Path Sampling |
title_fullStr | Molecular Understanding of Homogeneous Nucleation
of CO(2) Hydrates Using Transition Path Sampling |
title_full_unstemmed | Molecular Understanding of Homogeneous Nucleation
of CO(2) Hydrates Using Transition Path Sampling |
title_short | Molecular Understanding of Homogeneous Nucleation
of CO(2) Hydrates Using Transition Path Sampling |
title_sort | molecular understanding of homogeneous nucleation
of co(2) hydrates using transition path sampling |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7816195/ https://www.ncbi.nlm.nih.gov/pubmed/33379869 http://dx.doi.org/10.1021/acs.jpcb.0c09915 |
work_keys_str_mv | AT arjuna molecularunderstandingofhomogeneousnucleationofco2hydratesusingtransitionpathsampling AT bolhuispg molecularunderstandingofhomogeneousnucleationofco2hydratesusingtransitionpathsampling |