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A novel DNA repair‐related nomogram predicts survival in low‐grade gliomas
AIMS: We aimed to create a tumor recurrent‐based prediction model to predict recurrence and survival in patients with low‐grade glioma. METHODS: This study enrolled 291 patients (188 in the training group and 103 in the validation group) with clinicopathological information and transcriptome sequenc...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7816205/ https://www.ncbi.nlm.nih.gov/pubmed/33063446 http://dx.doi.org/10.1111/cns.13464 |
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author | Li, Guanzhang Wu, Fan Zeng, Fan Zhai, You Feng, Yuemei Chang, Yuanhao Wang, Di Jiang, Tao Zhang, Wei |
author_facet | Li, Guanzhang Wu, Fan Zeng, Fan Zhai, You Feng, Yuemei Chang, Yuanhao Wang, Di Jiang, Tao Zhang, Wei |
author_sort | Li, Guanzhang |
collection | PubMed |
description | AIMS: We aimed to create a tumor recurrent‐based prediction model to predict recurrence and survival in patients with low‐grade glioma. METHODS: This study enrolled 291 patients (188 in the training group and 103 in the validation group) with clinicopathological information and transcriptome sequencing data. LASSO‐COX algorithm was applied to shrink predictive factor size and build a predictive recurrent signature. GO, KEGG, and GSVA analyses were performed for function annotations of the recurrent signature. The calibration curves and C‐Index were assessed to evaluate the nomogram's performance. RESULTS: This study found that DNA repair functions of tumor cells were significantly enriched in recurrent low‐grade gliomas. A predictive recurrent signature, built by the LASSO‐COX algorithm, was significantly associated with overall survival and progression‐free survival in low‐grade gliomas. Moreover, function annotations analysis of the predictive recurrent signature exhibited that the signature was associated with DNA repair functions. The nomogram, combining the predictive recurrent signature and clinical prognostic predictors, showed powerful prognostic ability in the training and validation groups. CONCLUSION: An individualized prediction model was created to predict 1‐, 2‐, 3‐, 5‐, and 10‐year survival and recurrent rate of patients with low‐grade glioma, which may serve as a potential tool to guide postoperative individualized care. |
format | Online Article Text |
id | pubmed-7816205 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-78162052021-01-27 A novel DNA repair‐related nomogram predicts survival in low‐grade gliomas Li, Guanzhang Wu, Fan Zeng, Fan Zhai, You Feng, Yuemei Chang, Yuanhao Wang, Di Jiang, Tao Zhang, Wei CNS Neurosci Ther Original Articles AIMS: We aimed to create a tumor recurrent‐based prediction model to predict recurrence and survival in patients with low‐grade glioma. METHODS: This study enrolled 291 patients (188 in the training group and 103 in the validation group) with clinicopathological information and transcriptome sequencing data. LASSO‐COX algorithm was applied to shrink predictive factor size and build a predictive recurrent signature. GO, KEGG, and GSVA analyses were performed for function annotations of the recurrent signature. The calibration curves and C‐Index were assessed to evaluate the nomogram's performance. RESULTS: This study found that DNA repair functions of tumor cells were significantly enriched in recurrent low‐grade gliomas. A predictive recurrent signature, built by the LASSO‐COX algorithm, was significantly associated with overall survival and progression‐free survival in low‐grade gliomas. Moreover, function annotations analysis of the predictive recurrent signature exhibited that the signature was associated with DNA repair functions. The nomogram, combining the predictive recurrent signature and clinical prognostic predictors, showed powerful prognostic ability in the training and validation groups. CONCLUSION: An individualized prediction model was created to predict 1‐, 2‐, 3‐, 5‐, and 10‐year survival and recurrent rate of patients with low‐grade glioma, which may serve as a potential tool to guide postoperative individualized care. John Wiley and Sons Inc. 2020-10-16 /pmc/articles/PMC7816205/ /pubmed/33063446 http://dx.doi.org/10.1111/cns.13464 Text en © 2020 The Authors. CNS Neuroscience & Therapeutics Published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Li, Guanzhang Wu, Fan Zeng, Fan Zhai, You Feng, Yuemei Chang, Yuanhao Wang, Di Jiang, Tao Zhang, Wei A novel DNA repair‐related nomogram predicts survival in low‐grade gliomas |
title | A novel DNA repair‐related nomogram predicts survival in low‐grade gliomas |
title_full | A novel DNA repair‐related nomogram predicts survival in low‐grade gliomas |
title_fullStr | A novel DNA repair‐related nomogram predicts survival in low‐grade gliomas |
title_full_unstemmed | A novel DNA repair‐related nomogram predicts survival in low‐grade gliomas |
title_short | A novel DNA repair‐related nomogram predicts survival in low‐grade gliomas |
title_sort | novel dna repair‐related nomogram predicts survival in low‐grade gliomas |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7816205/ https://www.ncbi.nlm.nih.gov/pubmed/33063446 http://dx.doi.org/10.1111/cns.13464 |
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