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A novel DNA repair‐related nomogram predicts survival in low‐grade gliomas

AIMS: We aimed to create a tumor recurrent‐based prediction model to predict recurrence and survival in patients with low‐grade glioma. METHODS: This study enrolled 291 patients (188 in the training group and 103 in the validation group) with clinicopathological information and transcriptome sequenc...

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Autores principales: Li, Guanzhang, Wu, Fan, Zeng, Fan, Zhai, You, Feng, Yuemei, Chang, Yuanhao, Wang, Di, Jiang, Tao, Zhang, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7816205/
https://www.ncbi.nlm.nih.gov/pubmed/33063446
http://dx.doi.org/10.1111/cns.13464
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author Li, Guanzhang
Wu, Fan
Zeng, Fan
Zhai, You
Feng, Yuemei
Chang, Yuanhao
Wang, Di
Jiang, Tao
Zhang, Wei
author_facet Li, Guanzhang
Wu, Fan
Zeng, Fan
Zhai, You
Feng, Yuemei
Chang, Yuanhao
Wang, Di
Jiang, Tao
Zhang, Wei
author_sort Li, Guanzhang
collection PubMed
description AIMS: We aimed to create a tumor recurrent‐based prediction model to predict recurrence and survival in patients with low‐grade glioma. METHODS: This study enrolled 291 patients (188 in the training group and 103 in the validation group) with clinicopathological information and transcriptome sequencing data. LASSO‐COX algorithm was applied to shrink predictive factor size and build a predictive recurrent signature. GO, KEGG, and GSVA analyses were performed for function annotations of the recurrent signature. The calibration curves and C‐Index were assessed to evaluate the nomogram's performance. RESULTS: This study found that DNA repair functions of tumor cells were significantly enriched in recurrent low‐grade gliomas. A predictive recurrent signature, built by the LASSO‐COX algorithm, was significantly associated with overall survival and progression‐free survival in low‐grade gliomas. Moreover, function annotations analysis of the predictive recurrent signature exhibited that the signature was associated with DNA repair functions. The nomogram, combining the predictive recurrent signature and clinical prognostic predictors, showed powerful prognostic ability in the training and validation groups. CONCLUSION: An individualized prediction model was created to predict 1‐, 2‐, 3‐, 5‐, and 10‐year survival and recurrent rate of patients with low‐grade glioma, which may serve as a potential tool to guide postoperative individualized care.
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spelling pubmed-78162052021-01-27 A novel DNA repair‐related nomogram predicts survival in low‐grade gliomas Li, Guanzhang Wu, Fan Zeng, Fan Zhai, You Feng, Yuemei Chang, Yuanhao Wang, Di Jiang, Tao Zhang, Wei CNS Neurosci Ther Original Articles AIMS: We aimed to create a tumor recurrent‐based prediction model to predict recurrence and survival in patients with low‐grade glioma. METHODS: This study enrolled 291 patients (188 in the training group and 103 in the validation group) with clinicopathological information and transcriptome sequencing data. LASSO‐COX algorithm was applied to shrink predictive factor size and build a predictive recurrent signature. GO, KEGG, and GSVA analyses were performed for function annotations of the recurrent signature. The calibration curves and C‐Index were assessed to evaluate the nomogram's performance. RESULTS: This study found that DNA repair functions of tumor cells were significantly enriched in recurrent low‐grade gliomas. A predictive recurrent signature, built by the LASSO‐COX algorithm, was significantly associated with overall survival and progression‐free survival in low‐grade gliomas. Moreover, function annotations analysis of the predictive recurrent signature exhibited that the signature was associated with DNA repair functions. The nomogram, combining the predictive recurrent signature and clinical prognostic predictors, showed powerful prognostic ability in the training and validation groups. CONCLUSION: An individualized prediction model was created to predict 1‐, 2‐, 3‐, 5‐, and 10‐year survival and recurrent rate of patients with low‐grade glioma, which may serve as a potential tool to guide postoperative individualized care. John Wiley and Sons Inc. 2020-10-16 /pmc/articles/PMC7816205/ /pubmed/33063446 http://dx.doi.org/10.1111/cns.13464 Text en © 2020 The Authors. CNS Neuroscience & Therapeutics Published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Li, Guanzhang
Wu, Fan
Zeng, Fan
Zhai, You
Feng, Yuemei
Chang, Yuanhao
Wang, Di
Jiang, Tao
Zhang, Wei
A novel DNA repair‐related nomogram predicts survival in low‐grade gliomas
title A novel DNA repair‐related nomogram predicts survival in low‐grade gliomas
title_full A novel DNA repair‐related nomogram predicts survival in low‐grade gliomas
title_fullStr A novel DNA repair‐related nomogram predicts survival in low‐grade gliomas
title_full_unstemmed A novel DNA repair‐related nomogram predicts survival in low‐grade gliomas
title_short A novel DNA repair‐related nomogram predicts survival in low‐grade gliomas
title_sort novel dna repair‐related nomogram predicts survival in low‐grade gliomas
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7816205/
https://www.ncbi.nlm.nih.gov/pubmed/33063446
http://dx.doi.org/10.1111/cns.13464
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