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Key genes in youth colorectal cancer based on data mining and verification by reverse transcription-quantitative PCR

In recent years, among all patients with colorectal cancer, the proportion of young patients has been gradually increasing. However, the molecular mechanisms involved in colorectal cancer in the young are largely unknown. In the present study the Gene Expression Omnibus (GEO) and The Cancer Genome A...

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Autores principales: Chen, Jianxin, Lin, Min, Che, Yan, Guo, Jian, Lin, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: D.A. Spandidos 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7816307/
https://www.ncbi.nlm.nih.gov/pubmed/33574933
http://dx.doi.org/10.3892/ol.2021.12455
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author Chen, Jianxin
Lin, Min
Che, Yan
Guo, Jian
Lin, Wei
author_facet Chen, Jianxin
Lin, Min
Che, Yan
Guo, Jian
Lin, Wei
author_sort Chen, Jianxin
collection PubMed
description In recent years, among all patients with colorectal cancer, the proportion of young patients has been gradually increasing. However, the molecular mechanisms involved in colorectal cancer in the young are largely unknown. In the present study the Gene Expression Omnibus (GEO) and The Cancer Genome Atlas datasets were integrated to elucidate the key gene biomarkers in these patients. The GSE41657 and GSE41258 datasets were downloaded from the GEO database. By screening for differentially expressed genes, Gene Ontology analysis, Kyoto Encyclopedia of Genes and Genomes pathway analysis, protein-protein interaction analysis, hub gene screening and survival analysis, two key genes, CXCL8 and VEGFA, which were enriched in cancer pathways, were obtained. Reverse transcription-quantitative (RT-q)PCR was performed to verify the outcome obtained by bioinformatics analysis. In conclusion, the present study identified two key genes using bioinformatics analysis and RT-qPCR validation. These results indicated that the candidate genes may be involved in the progression of colorectal cancer in young people, and these two genes may act as ideal prognostic indicators or therapeutic targets for colorectal cancer in the youth.
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spelling pubmed-78163072021-02-10 Key genes in youth colorectal cancer based on data mining and verification by reverse transcription-quantitative PCR Chen, Jianxin Lin, Min Che, Yan Guo, Jian Lin, Wei Oncol Lett Articles In recent years, among all patients with colorectal cancer, the proportion of young patients has been gradually increasing. However, the molecular mechanisms involved in colorectal cancer in the young are largely unknown. In the present study the Gene Expression Omnibus (GEO) and The Cancer Genome Atlas datasets were integrated to elucidate the key gene biomarkers in these patients. The GSE41657 and GSE41258 datasets were downloaded from the GEO database. By screening for differentially expressed genes, Gene Ontology analysis, Kyoto Encyclopedia of Genes and Genomes pathway analysis, protein-protein interaction analysis, hub gene screening and survival analysis, two key genes, CXCL8 and VEGFA, which were enriched in cancer pathways, were obtained. Reverse transcription-quantitative (RT-q)PCR was performed to verify the outcome obtained by bioinformatics analysis. In conclusion, the present study identified two key genes using bioinformatics analysis and RT-qPCR validation. These results indicated that the candidate genes may be involved in the progression of colorectal cancer in young people, and these two genes may act as ideal prognostic indicators or therapeutic targets for colorectal cancer in the youth. D.A. Spandidos 2021-03 2021-01-08 /pmc/articles/PMC7816307/ /pubmed/33574933 http://dx.doi.org/10.3892/ol.2021.12455 Text en Copyright: © Chen et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Articles
Chen, Jianxin
Lin, Min
Che, Yan
Guo, Jian
Lin, Wei
Key genes in youth colorectal cancer based on data mining and verification by reverse transcription-quantitative PCR
title Key genes in youth colorectal cancer based on data mining and verification by reverse transcription-quantitative PCR
title_full Key genes in youth colorectal cancer based on data mining and verification by reverse transcription-quantitative PCR
title_fullStr Key genes in youth colorectal cancer based on data mining and verification by reverse transcription-quantitative PCR
title_full_unstemmed Key genes in youth colorectal cancer based on data mining and verification by reverse transcription-quantitative PCR
title_short Key genes in youth colorectal cancer based on data mining and verification by reverse transcription-quantitative PCR
title_sort key genes in youth colorectal cancer based on data mining and verification by reverse transcription-quantitative pcr
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7816307/
https://www.ncbi.nlm.nih.gov/pubmed/33574933
http://dx.doi.org/10.3892/ol.2021.12455
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