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Data-driven modeling and forecasting of COVID-19 outbreak for public policy making

This paper presents a data-driven approach for COVID-19 modeling and forecasting, which can be used by public policy and decision makers to control the outbreak through Non-Pharmaceutical Interventions (NPI). First, we apply an extended Kalman filter (EKF) to a discrete-time stochastic augmented com...

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Autores principales: Hasan, A., Putri, E.R.M., Susanto, H., Nuraini, N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: ISA. Published by Elsevier Ltd. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7816594/
https://www.ncbi.nlm.nih.gov/pubmed/33487397
http://dx.doi.org/10.1016/j.isatra.2021.01.028
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author Hasan, A.
Putri, E.R.M.
Susanto, H.
Nuraini, N.
author_facet Hasan, A.
Putri, E.R.M.
Susanto, H.
Nuraini, N.
author_sort Hasan, A.
collection PubMed
description This paper presents a data-driven approach for COVID-19 modeling and forecasting, which can be used by public policy and decision makers to control the outbreak through Non-Pharmaceutical Interventions (NPI). First, we apply an extended Kalman filter (EKF) to a discrete-time stochastic augmented compartmental model to estimate the time-varying effective reproduction number ([Formula: see text]). We use daily confirmed cases, active cases, recovered cases, deceased cases, Case-Fatality-Rate (CFR), and infectious time as inputs for the model. Furthermore, we define a Transmission Index (TI) as a ratio between the instantaneous and the maximum value of the effective reproduction number. The value of TI indicates the “effectiveness” of the disease transmission from a contact between a susceptible and an infectious individual in the presence of current measures, such as physical distancing and lock-down, relative to a normal condition. Based on the value of TI, we forecast different scenarios to see the effect of relaxing and tightening public measures. Case studies in three countries are provided to show the practicability of our approach.
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spelling pubmed-78165942021-01-21 Data-driven modeling and forecasting of COVID-19 outbreak for public policy making Hasan, A. Putri, E.R.M. Susanto, H. Nuraini, N. ISA Trans Research Article This paper presents a data-driven approach for COVID-19 modeling and forecasting, which can be used by public policy and decision makers to control the outbreak through Non-Pharmaceutical Interventions (NPI). First, we apply an extended Kalman filter (EKF) to a discrete-time stochastic augmented compartmental model to estimate the time-varying effective reproduction number ([Formula: see text]). We use daily confirmed cases, active cases, recovered cases, deceased cases, Case-Fatality-Rate (CFR), and infectious time as inputs for the model. Furthermore, we define a Transmission Index (TI) as a ratio between the instantaneous and the maximum value of the effective reproduction number. The value of TI indicates the “effectiveness” of the disease transmission from a contact between a susceptible and an infectious individual in the presence of current measures, such as physical distancing and lock-down, relative to a normal condition. Based on the value of TI, we forecast different scenarios to see the effect of relaxing and tightening public measures. Case studies in three countries are provided to show the practicability of our approach. ISA. Published by Elsevier Ltd. 2022-05 2021-01-20 /pmc/articles/PMC7816594/ /pubmed/33487397 http://dx.doi.org/10.1016/j.isatra.2021.01.028 Text en © 2021 ISA. Published by Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Research Article
Hasan, A.
Putri, E.R.M.
Susanto, H.
Nuraini, N.
Data-driven modeling and forecasting of COVID-19 outbreak for public policy making
title Data-driven modeling and forecasting of COVID-19 outbreak for public policy making
title_full Data-driven modeling and forecasting of COVID-19 outbreak for public policy making
title_fullStr Data-driven modeling and forecasting of COVID-19 outbreak for public policy making
title_full_unstemmed Data-driven modeling and forecasting of COVID-19 outbreak for public policy making
title_short Data-driven modeling and forecasting of COVID-19 outbreak for public policy making
title_sort data-driven modeling and forecasting of covid-19 outbreak for public policy making
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7816594/
https://www.ncbi.nlm.nih.gov/pubmed/33487397
http://dx.doi.org/10.1016/j.isatra.2021.01.028
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