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LAPTM5 Plays a Key Role in the Diagnosis and Prognosis of Testicular Germ Cell Tumors
OBJECTIVE: Testicular germ cell tumors (TGCT) are a serious malignant tumor with low early diagnosis rates and high mortality. METHODS: To investigate novel biomarkers to predict the diagnosis and prognosis of this cancer, bioinformatics analysis was used as an accurate, efficient, and economical me...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7817270/ https://www.ncbi.nlm.nih.gov/pubmed/33521125 http://dx.doi.org/10.1155/2021/8816456 |
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author | Li, Xiunan Su, Yu Zhang, Jiayao Zhu, Ye Xu, Yingkun Wu, Guangzhen |
author_facet | Li, Xiunan Su, Yu Zhang, Jiayao Zhu, Ye Xu, Yingkun Wu, Guangzhen |
author_sort | Li, Xiunan |
collection | PubMed |
description | OBJECTIVE: Testicular germ cell tumors (TGCT) are a serious malignant tumor with low early diagnosis rates and high mortality. METHODS: To investigate novel biomarkers to predict the diagnosis and prognosis of this cancer, bioinformatics analysis was used as an accurate, efficient, and economical method. RESULTS: Our study detected 39 upregulated and 589 downregulated differentially expressed genes (DEGs) using the GEO and TCGA databases. To identify the function of DEGs, GO functional analysis, three pathway analysis (KEGG, REACTOME, and PANTHER), and protein-protein interaction network were performed using the KOBAS website, as well as the String database. After a series of analyses in GEPIA and TIMER, including differential expression, we found one candidate gene related to the prognosis and diagnosis of TGCT. LAPTM5 was also associated with CD8+ T cell and PDCD1 expression, which suggests that it may affect immune infiltration. CONCLUSIONS: LAPTM5 was identified as a hub gene, which could be used as a potential biomarker for TGCT diagnosis and prognosis. |
format | Online Article Text |
id | pubmed-7817270 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-78172702021-01-28 LAPTM5 Plays a Key Role in the Diagnosis and Prognosis of Testicular Germ Cell Tumors Li, Xiunan Su, Yu Zhang, Jiayao Zhu, Ye Xu, Yingkun Wu, Guangzhen Int J Genomics Research Article OBJECTIVE: Testicular germ cell tumors (TGCT) are a serious malignant tumor with low early diagnosis rates and high mortality. METHODS: To investigate novel biomarkers to predict the diagnosis and prognosis of this cancer, bioinformatics analysis was used as an accurate, efficient, and economical method. RESULTS: Our study detected 39 upregulated and 589 downregulated differentially expressed genes (DEGs) using the GEO and TCGA databases. To identify the function of DEGs, GO functional analysis, three pathway analysis (KEGG, REACTOME, and PANTHER), and protein-protein interaction network were performed using the KOBAS website, as well as the String database. After a series of analyses in GEPIA and TIMER, including differential expression, we found one candidate gene related to the prognosis and diagnosis of TGCT. LAPTM5 was also associated with CD8+ T cell and PDCD1 expression, which suggests that it may affect immune infiltration. CONCLUSIONS: LAPTM5 was identified as a hub gene, which could be used as a potential biomarker for TGCT diagnosis and prognosis. Hindawi 2021-01-13 /pmc/articles/PMC7817270/ /pubmed/33521125 http://dx.doi.org/10.1155/2021/8816456 Text en Copyright © 2021 Xiunan Li et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Li, Xiunan Su, Yu Zhang, Jiayao Zhu, Ye Xu, Yingkun Wu, Guangzhen LAPTM5 Plays a Key Role in the Diagnosis and Prognosis of Testicular Germ Cell Tumors |
title | LAPTM5 Plays a Key Role in the Diagnosis and Prognosis of Testicular Germ Cell Tumors |
title_full | LAPTM5 Plays a Key Role in the Diagnosis and Prognosis of Testicular Germ Cell Tumors |
title_fullStr | LAPTM5 Plays a Key Role in the Diagnosis and Prognosis of Testicular Germ Cell Tumors |
title_full_unstemmed | LAPTM5 Plays a Key Role in the Diagnosis and Prognosis of Testicular Germ Cell Tumors |
title_short | LAPTM5 Plays a Key Role in the Diagnosis and Prognosis of Testicular Germ Cell Tumors |
title_sort | laptm5 plays a key role in the diagnosis and prognosis of testicular germ cell tumors |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7817270/ https://www.ncbi.nlm.nih.gov/pubmed/33521125 http://dx.doi.org/10.1155/2021/8816456 |
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