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Enzymology of the pathway for ATP production by arginine breakdown
In cells, the breakdown of arginine to ornithine and ammonium ion plus carbon dioxide is coupled to the generation of metabolic energy in the form of ATP. The arginine breakdown pathway is minimally composed of arginine deiminase, ornithine transcarbamoylase, carbamate kinase, and an arginine/ornith...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7818446/ https://www.ncbi.nlm.nih.gov/pubmed/32306469 http://dx.doi.org/10.1111/febs.15337 |
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author | Pols, Tjeerd Singh, Shubham Deelman‐Driessen, Cecile Gaastra, Bauke F. Poolman, Bert |
author_facet | Pols, Tjeerd Singh, Shubham Deelman‐Driessen, Cecile Gaastra, Bauke F. Poolman, Bert |
author_sort | Pols, Tjeerd |
collection | PubMed |
description | In cells, the breakdown of arginine to ornithine and ammonium ion plus carbon dioxide is coupled to the generation of metabolic energy in the form of ATP. The arginine breakdown pathway is minimally composed of arginine deiminase, ornithine transcarbamoylase, carbamate kinase, and an arginine/ornithine antiporter; ammonia and carbon dioxide most likely diffuse passively across the membrane. The genes for the enzymes and transporter have been cloned and expressed, and the proteins have been purified from Lactococcus lactis IL1403 and incorporated into lipid vesicles for sustained production of ATP. Here, we study the kinetic parameters and biochemical properties of the individual enzymes and the antiporter, and we determine how the physicochemical conditions, effector composition, and effector concentration affect the enzymes. We report the K (M) and V (MAX) values for catalysis and the native oligomeric state of all proteins, and we measured the effect of pathway intermediates, pH, temperature, freeze–thaw cycles, and salts on the activity of the cytosolic enzymes. We also present data on the protein‐to‐lipid ratio and lipid composition dependence of the antiporter. |
format | Online Article Text |
id | pubmed-7818446 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-78184462021-01-29 Enzymology of the pathway for ATP production by arginine breakdown Pols, Tjeerd Singh, Shubham Deelman‐Driessen, Cecile Gaastra, Bauke F. Poolman, Bert FEBS J Original Articles In cells, the breakdown of arginine to ornithine and ammonium ion plus carbon dioxide is coupled to the generation of metabolic energy in the form of ATP. The arginine breakdown pathway is minimally composed of arginine deiminase, ornithine transcarbamoylase, carbamate kinase, and an arginine/ornithine antiporter; ammonia and carbon dioxide most likely diffuse passively across the membrane. The genes for the enzymes and transporter have been cloned and expressed, and the proteins have been purified from Lactococcus lactis IL1403 and incorporated into lipid vesicles for sustained production of ATP. Here, we study the kinetic parameters and biochemical properties of the individual enzymes and the antiporter, and we determine how the physicochemical conditions, effector composition, and effector concentration affect the enzymes. We report the K (M) and V (MAX) values for catalysis and the native oligomeric state of all proteins, and we measured the effect of pathway intermediates, pH, temperature, freeze–thaw cycles, and salts on the activity of the cytosolic enzymes. We also present data on the protein‐to‐lipid ratio and lipid composition dependence of the antiporter. John Wiley and Sons Inc. 2020-05-05 2021-01 /pmc/articles/PMC7818446/ /pubmed/32306469 http://dx.doi.org/10.1111/febs.15337 Text en © 2020 The Authors. The FEBS Journal published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Pols, Tjeerd Singh, Shubham Deelman‐Driessen, Cecile Gaastra, Bauke F. Poolman, Bert Enzymology of the pathway for ATP production by arginine breakdown |
title | Enzymology of the pathway for ATP production by arginine breakdown |
title_full | Enzymology of the pathway for ATP production by arginine breakdown |
title_fullStr | Enzymology of the pathway for ATP production by arginine breakdown |
title_full_unstemmed | Enzymology of the pathway for ATP production by arginine breakdown |
title_short | Enzymology of the pathway for ATP production by arginine breakdown |
title_sort | enzymology of the pathway for atp production by arginine breakdown |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7818446/ https://www.ncbi.nlm.nih.gov/pubmed/32306469 http://dx.doi.org/10.1111/febs.15337 |
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