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Enzymology of the pathway for ATP production by arginine breakdown

In cells, the breakdown of arginine to ornithine and ammonium ion plus carbon dioxide is coupled to the generation of metabolic energy in the form of ATP. The arginine breakdown pathway is minimally composed of arginine deiminase, ornithine transcarbamoylase, carbamate kinase, and an arginine/ornith...

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Autores principales: Pols, Tjeerd, Singh, Shubham, Deelman‐Driessen, Cecile, Gaastra, Bauke F., Poolman, Bert
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7818446/
https://www.ncbi.nlm.nih.gov/pubmed/32306469
http://dx.doi.org/10.1111/febs.15337
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author Pols, Tjeerd
Singh, Shubham
Deelman‐Driessen, Cecile
Gaastra, Bauke F.
Poolman, Bert
author_facet Pols, Tjeerd
Singh, Shubham
Deelman‐Driessen, Cecile
Gaastra, Bauke F.
Poolman, Bert
author_sort Pols, Tjeerd
collection PubMed
description In cells, the breakdown of arginine to ornithine and ammonium ion plus carbon dioxide is coupled to the generation of metabolic energy in the form of ATP. The arginine breakdown pathway is minimally composed of arginine deiminase, ornithine transcarbamoylase, carbamate kinase, and an arginine/ornithine antiporter; ammonia and carbon dioxide most likely diffuse passively across the membrane. The genes for the enzymes and transporter have been cloned and expressed, and the proteins have been purified from Lactococcus lactis IL1403 and incorporated into lipid vesicles for sustained production of ATP. Here, we study the kinetic parameters and biochemical properties of the individual enzymes and the antiporter, and we determine how the physicochemical conditions, effector composition, and effector concentration affect the enzymes. We report the K (M) and V (MAX) values for catalysis and the native oligomeric state of all proteins, and we measured the effect of pathway intermediates, pH, temperature, freeze–thaw cycles, and salts on the activity of the cytosolic enzymes. We also present data on the protein‐to‐lipid ratio and lipid composition dependence of the antiporter.
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spelling pubmed-78184462021-01-29 Enzymology of the pathway for ATP production by arginine breakdown Pols, Tjeerd Singh, Shubham Deelman‐Driessen, Cecile Gaastra, Bauke F. Poolman, Bert FEBS J Original Articles In cells, the breakdown of arginine to ornithine and ammonium ion plus carbon dioxide is coupled to the generation of metabolic energy in the form of ATP. The arginine breakdown pathway is minimally composed of arginine deiminase, ornithine transcarbamoylase, carbamate kinase, and an arginine/ornithine antiporter; ammonia and carbon dioxide most likely diffuse passively across the membrane. The genes for the enzymes and transporter have been cloned and expressed, and the proteins have been purified from Lactococcus lactis IL1403 and incorporated into lipid vesicles for sustained production of ATP. Here, we study the kinetic parameters and biochemical properties of the individual enzymes and the antiporter, and we determine how the physicochemical conditions, effector composition, and effector concentration affect the enzymes. We report the K (M) and V (MAX) values for catalysis and the native oligomeric state of all proteins, and we measured the effect of pathway intermediates, pH, temperature, freeze–thaw cycles, and salts on the activity of the cytosolic enzymes. We also present data on the protein‐to‐lipid ratio and lipid composition dependence of the antiporter. John Wiley and Sons Inc. 2020-05-05 2021-01 /pmc/articles/PMC7818446/ /pubmed/32306469 http://dx.doi.org/10.1111/febs.15337 Text en © 2020 The Authors. The FEBS Journal published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Pols, Tjeerd
Singh, Shubham
Deelman‐Driessen, Cecile
Gaastra, Bauke F.
Poolman, Bert
Enzymology of the pathway for ATP production by arginine breakdown
title Enzymology of the pathway for ATP production by arginine breakdown
title_full Enzymology of the pathway for ATP production by arginine breakdown
title_fullStr Enzymology of the pathway for ATP production by arginine breakdown
title_full_unstemmed Enzymology of the pathway for ATP production by arginine breakdown
title_short Enzymology of the pathway for ATP production by arginine breakdown
title_sort enzymology of the pathway for atp production by arginine breakdown
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7818446/
https://www.ncbi.nlm.nih.gov/pubmed/32306469
http://dx.doi.org/10.1111/febs.15337
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