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Bioinformatics analysis combined with experiments predicts CENPK as a potential prognostic factor for lung adenocarcinoma
BACKGROUND: Lung cancer is the most common malignant tumor. Identification of novel diagnostic and prognostic biomarkers for lung cancer is a key research imperative. The role of centromere protein K (CENPK) in cancer is an emerging research hotspot. However, the role of CENPK in the progression of...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7818917/ https://www.ncbi.nlm.nih.gov/pubmed/33478508 http://dx.doi.org/10.1186/s12935-021-01760-y |
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author | Ma, Jiayu Chen, Xiaochuan Lin, Mingqiang Wang, Zhiping Wu, Yahua Li, Jiancheng |
author_facet | Ma, Jiayu Chen, Xiaochuan Lin, Mingqiang Wang, Zhiping Wu, Yahua Li, Jiancheng |
author_sort | Ma, Jiayu |
collection | PubMed |
description | BACKGROUND: Lung cancer is the most common malignant tumor. Identification of novel diagnostic and prognostic biomarkers for lung cancer is a key research imperative. The role of centromere protein K (CENPK) in cancer is an emerging research hotspot. However, the role of CENPK in the progression of lung adenocarcinoma (LAC) is not well characterized. METHODS: In this study, we identified CENPK as a potential new gene for lung cancer based on bioinformatics analysis. In addition, in vitro experiments were performed to verify the function of this gene. We investigated the expression of CENPK in LAC by analyses of datasets from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. Differential expression analyses, gene ontology (GO) enrichment, Kyoto encyclopedia of genes and genomes (KEGG) analysis, and gene set enrichment analysis (GSEA) were conducted to evaluate the diagnostic and prognostic relevance of CENPK. Then, for evaluating the biological behavior and role of CENPK in lung cancer cells, we did a series of vitro experiments, such as immunohistochemistry analysis, Western blot analysis, CCK8 assay, transwell assay, flow cytometry, and wound healing assay. RESULTS: We demonstrated overexpression of CENPK in LAC; in addition, increased expression of CENPK was associated with clinical progression. Moreover, CENPK was found to be an independent risk factor in patients with LAC. Furthermore, we observed activation of CENPK-related signaling pathways in patients with LAC. CONCLUSIONS: Our findings indicate a potential role of CENPK in promoting tumor proliferation, invasion, and metastasis. It may serve as a novel diagnostic and prognostic biomarker in patients with LAC. |
format | Online Article Text |
id | pubmed-7818917 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-78189172021-01-22 Bioinformatics analysis combined with experiments predicts CENPK as a potential prognostic factor for lung adenocarcinoma Ma, Jiayu Chen, Xiaochuan Lin, Mingqiang Wang, Zhiping Wu, Yahua Li, Jiancheng Cancer Cell Int Primary Research BACKGROUND: Lung cancer is the most common malignant tumor. Identification of novel diagnostic and prognostic biomarkers for lung cancer is a key research imperative. The role of centromere protein K (CENPK) in cancer is an emerging research hotspot. However, the role of CENPK in the progression of lung adenocarcinoma (LAC) is not well characterized. METHODS: In this study, we identified CENPK as a potential new gene for lung cancer based on bioinformatics analysis. In addition, in vitro experiments were performed to verify the function of this gene. We investigated the expression of CENPK in LAC by analyses of datasets from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. Differential expression analyses, gene ontology (GO) enrichment, Kyoto encyclopedia of genes and genomes (KEGG) analysis, and gene set enrichment analysis (GSEA) were conducted to evaluate the diagnostic and prognostic relevance of CENPK. Then, for evaluating the biological behavior and role of CENPK in lung cancer cells, we did a series of vitro experiments, such as immunohistochemistry analysis, Western blot analysis, CCK8 assay, transwell assay, flow cytometry, and wound healing assay. RESULTS: We demonstrated overexpression of CENPK in LAC; in addition, increased expression of CENPK was associated with clinical progression. Moreover, CENPK was found to be an independent risk factor in patients with LAC. Furthermore, we observed activation of CENPK-related signaling pathways in patients with LAC. CONCLUSIONS: Our findings indicate a potential role of CENPK in promoting tumor proliferation, invasion, and metastasis. It may serve as a novel diagnostic and prognostic biomarker in patients with LAC. BioMed Central 2021-01-21 /pmc/articles/PMC7818917/ /pubmed/33478508 http://dx.doi.org/10.1186/s12935-021-01760-y Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Primary Research Ma, Jiayu Chen, Xiaochuan Lin, Mingqiang Wang, Zhiping Wu, Yahua Li, Jiancheng Bioinformatics analysis combined with experiments predicts CENPK as a potential prognostic factor for lung adenocarcinoma |
title | Bioinformatics analysis combined with experiments predicts CENPK as a potential prognostic factor for lung adenocarcinoma |
title_full | Bioinformatics analysis combined with experiments predicts CENPK as a potential prognostic factor for lung adenocarcinoma |
title_fullStr | Bioinformatics analysis combined with experiments predicts CENPK as a potential prognostic factor for lung adenocarcinoma |
title_full_unstemmed | Bioinformatics analysis combined with experiments predicts CENPK as a potential prognostic factor for lung adenocarcinoma |
title_short | Bioinformatics analysis combined with experiments predicts CENPK as a potential prognostic factor for lung adenocarcinoma |
title_sort | bioinformatics analysis combined with experiments predicts cenpk as a potential prognostic factor for lung adenocarcinoma |
topic | Primary Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7818917/ https://www.ncbi.nlm.nih.gov/pubmed/33478508 http://dx.doi.org/10.1186/s12935-021-01760-y |
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