Cargando…

Genome-wide identification, evolution, expression, and alternative splicing profiles of peroxiredoxin genes in cotton

Peroxiredoxin (PRX) is a ubiquitous thioredoxin-dependent peroxidase that can eliminate excessive free radicals produced by stress and protect cells from oxidative damage. PRXs are also involved in reactive oxygen species (ROS)- and redox-dependent signaling by performing redox interactions with oth...

Descripción completa

Detalles Bibliográficos
Autores principales:	Feng, Yulong, Wei, Renhui, Liu, Aiying, Fan, Senmiao, Che, JinCan, Zhang, Zhen, Tian, Baoming, Yuan, Youlu, Shi, Gongyao, Shang, Haihong
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	PeerJ Inc. 2021
Materias:	Bioinformatics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7819121/ https://www.ncbi.nlm.nih.gov/pubmed/33552724 http://dx.doi.org/10.7717/peerj.10685

Ejemplares similares

UDP-Glucose Dehydrogenases: Identification, Expression, and Function Analyses in Upland Cotton (Gossypium hirsutum)
por: Jia, Tingting, et al.
Publicado: (2021)

Splicing predictions reliably classify different types of alternative splicing
por: Busch, Anke, et al.
Publicado: (2015)

Splicing Express: a software suite for alternative splicing analysis using next-generation sequencing data
por: Kroll, Jose E., et al.
Publicado: (2015)

Leveraging transcript quantification for fast computation of alternative splicing profiles
por: Alamancos, Gael P., et al.
Publicado: (2015)

Identification of prognostic and metastasis-related alternative splicing signatures in hepatocellular carcinoma
por: Huang, Runzhi, et al.
Publicado: (2020)

Co-Expression Network Analysis and Hub Gene Selection for High-Quality Fiber in Upland Cotton (Gossypium hirsutum) Using RNA Sequencing Analysis
por: Zou, Xianyan, et al.
Publicado: (2019)

Alternative splicing in tea plants was extensively triggered by drought, heat and their combined stresses
por: Ding, Yiqian, et al.
Publicado: (2020)

Identification of rare alternative splicing events in MS/MS data reveals a significant fraction of alternative translation initiation sites
por: Kroll, José E., et al.
Publicado: (2014)

Analysis of pollen-specific alternative splicing in Arabidopsis thaliana via semi-quantitative PCR
por: Estrada, April D., et al.
Publicado: (2015)

Analysis of differential gene expression and alternative splicing is significantly influenced by choice of reference genome
por: Slabaugh, Erin, et al.
Publicado: (2019)

IsoSplitter: identification and characterization of alternative splicing sites without a reference genome
por: Wang, Yupeng, et al.
Publicado: (2021)

De novo assembly and functional annotation of blood transcriptome of loggerhead turtle, and in silico characterization of peroxiredoxins and thioredoxins
por: Hernández-Fernández, Javier, et al.
Publicado: (2021)

Genome-wide identification, phylogeny, and expression analysis of pectin methylesterases reveal their major role in cotton fiber development
por: Li, Weijie, et al.
Publicado: (2016)

DDX17 modulates the expression and alternative splicing of genes involved in apoptosis and proliferation in lung adenocarcinoma cells
por: He, Cheng, et al.
Publicado: (2022)

Identification of TPX2 Gene Family in Upland Cotton and its Functional Analysis in Cotton Fiber Development
por: Lei, Kang, et al.
Publicado: (2019)

Genome-Wide Analysis and Functional Characterization of LACS Gene Family Associated with Lipid Synthesis in Cotton (Gossypium spp.)
por: Zhong, Yike, et al.
Publicado: (2023)

Biological classification with RNA-seq data: Can alternatively spliced transcript expression enhance machine learning classifiers?
por: Johnson, Nathan T., et al.
Publicado: (2018)

Comprehensive characterization of the alternative splicing landscape in ovarian cancer reveals novel events associated with tumor-immune microenvironment
por: Sun, Dan, et al.
Publicado: (2022)

GOLPH3 modulates expression and alternative splicing of transcription factors associated with endometrial decidualization in human endometrial stromal cells
por: Zhu, Suqin, et al.
Publicado: (2023)

Quantitative Trait Loci and Transcriptome Analysis Reveal Genetic Basis of Fiber Quality Traits in CCRI70 RIL Population of Gossypium hirsutum
por: Jiang, Xiao, et al.
Publicado: (2021)

Co-expression network and comparative transcriptome analysis for fiber initiation and elongation reveal genetic differences in two lines from upland cotton CCRI70 RIL population
por: Jiang, Xiao, et al.
Publicado: (2021)

SERBP1 affects the apoptotic level by regulating the expression and alternative splicing of cellular and metabolic process genes in HeLa cells
por: Zhou, Junjie, et al.
Publicado: (2022)

Inheritance, QTLs, and Candidate Genes of Lint Percentage in Upland Cotton
por: Niu, Hao, et al.
Publicado: (2022)

Flavonoid biosynthesis controls fiber color in naturally colored cotton
por: Liu, Hai-Feng, et al.
Publicado: (2018)

Systematic analysis and prediction model construction of alternative splicing events in hepatocellular carcinoma: a study on the basis of large-scale spliceseq data from The Cancer Genome Atlas
por: Yang, Lingpeng, et al.
Publicado: (2019)

Comparative transcriptional and co-expression network analysis of two upland cotton accessions with extreme phenotypic differences reveals molecular mechanisms of fiber development
por: He, Jiasen, et al.
Publicado: (2023)

UDP-glucose pyrophosphorylase: genome-wide identification, expression and functional analyses in Gossypium hirsutum
por: Xu, Zhongyang, et al.
Publicado: (2022)

Splicing conservation signals in plant long noncoding RNAs
por: Corona-Gomez, Jose Antonio, et al.
Publicado: (2020)

DJExpress: An Integrated Application for Differential Splicing Analysis and Visualization
por: Gallego-Paez, Lina Marcela, et al.
Publicado: (2022)

Genome-wide identification of the MADS-box transcription factor family in pear (Pyrus bretschneideri) reveals evolution and functional divergence
por: Wang, Runze, et al.
Publicado: (2017)

Nucleotide sequence composition adjacent to intronic splice sites improves splicing efficiency via its effect on pre-mRNA local folding in fungi
por: Zafrir, Zohar, et al.
Publicado: (2015)

Genome-wide analysis suggests high level of microsynteny and purifying selection affect the evolution of EIN3/EIL family in Rosaceae
por: Cao, Yunpeng, et al.
Publicado: (2017)

RBP-Maps enables robust generation of splicing regulatory maps
por: Yee, Brian A., et al.
Publicado: (2019)

Predicting the effect of variants on splicing using Convolutional Neural Networks
por: Thanapattheerakul, Thanyathorn, et al.
Publicado: (2020)

Virulence effector SidJ evolution in Legionella pneumophila is driven by positive selection and intragenic recombination
por: Zhan, Xiao-Yong, et al.
Publicado: (2021)

Genome-wide artificial introgressions of Gossypium barbadense into G. hirsutum reveal superior loci for simultaneous improvement of cotton fiber quality and yield traits
por: Li, Shaoqi, et al.
Publicado: (2022)

Comparison of splice sites reveals that long noncoding RNAs are evolutionarily well conserved
por: Nitsche, Anne, et al.
Publicado: (2015)

Identification of prognostic splicing factors and exploration of their potential regulatory mechanisms in pancreatic adenocarcinoma
por: Rong, Min-hua, et al.
Publicado: (2020)

A sequence-based, deep learning model accurately predicts RNA splicing branchpoints
por: Paggi, Joseph M., et al.
Publicado: (2018)

Linkage and association analyses reveal that hub genes in energy-flow and lipid biosynthesis pathways form a cluster in upland cotton
por: Gong, Juwu, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_kbpns2nj5f4ana3esns5nvmb84