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The complete plastid genome of Phoenix canariensis Chabaud (Arecaceae) and phylogenetic analysis

Phoenix canariensis Chabaud is a vital ornamental and widely planted in the urban landscape of China. In this study, we reported the complete chloroplast genome (cpDNA) of P. canariensis, which is 158,477 bp in length, including a large single copy region (LSC) of 86,189 bp, a small single copy regi...

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Autores principales: Zou, Bowen, Long, Wanwan, Yang Wu, Li He
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7819129/
https://www.ncbi.nlm.nih.gov/pubmed/33521288
http://dx.doi.org/10.1080/23802359.2020.1852900
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author Zou, Bowen
Long, Wanwan
Yang Wu, Li He
author_facet Zou, Bowen
Long, Wanwan
Yang Wu, Li He
author_sort Zou, Bowen
collection PubMed
description Phoenix canariensis Chabaud is a vital ornamental and widely planted in the urban landscape of China. In this study, we reported the complete chloroplast genome (cpDNA) of P. canariensis, which is 158,477 bp in length, including a large single copy region (LSC) of 86,189 bp, a small single copy region (SSC) of 17,704 bp, and a pair of inverted repeats (IR) regions of 27,292 bp inserted between LSC and SSC. 132 genes are encoded, including 86 protein-encoding genes, 8 ribosomal RNA genes, and 38 transfer RNA genes. The overall GC content of the chloroplast genome is 37.22%, wherein the corresponding values in the LSC, SSC, and IR regions are 35.3%, 30.79%, and 42.35%, respectively. Phylogenetic analysis showed that P. canariensis is sister to P. dactylifera with strong bootstrap support.
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spelling pubmed-78191292021-01-28 The complete plastid genome of Phoenix canariensis Chabaud (Arecaceae) and phylogenetic analysis Zou, Bowen Long, Wanwan Yang Wu, Li He Mitochondrial DNA B Resour Mitogenome Announcement Phoenix canariensis Chabaud is a vital ornamental and widely planted in the urban landscape of China. In this study, we reported the complete chloroplast genome (cpDNA) of P. canariensis, which is 158,477 bp in length, including a large single copy region (LSC) of 86,189 bp, a small single copy region (SSC) of 17,704 bp, and a pair of inverted repeats (IR) regions of 27,292 bp inserted between LSC and SSC. 132 genes are encoded, including 86 protein-encoding genes, 8 ribosomal RNA genes, and 38 transfer RNA genes. The overall GC content of the chloroplast genome is 37.22%, wherein the corresponding values in the LSC, SSC, and IR regions are 35.3%, 30.79%, and 42.35%, respectively. Phylogenetic analysis showed that P. canariensis is sister to P. dactylifera with strong bootstrap support. Taylor & Francis 2021-01-13 /pmc/articles/PMC7819129/ /pubmed/33521288 http://dx.doi.org/10.1080/23802359.2020.1852900 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zou, Bowen
Long, Wanwan
Yang Wu, Li He
The complete plastid genome of Phoenix canariensis Chabaud (Arecaceae) and phylogenetic analysis
title The complete plastid genome of Phoenix canariensis Chabaud (Arecaceae) and phylogenetic analysis
title_full The complete plastid genome of Phoenix canariensis Chabaud (Arecaceae) and phylogenetic analysis
title_fullStr The complete plastid genome of Phoenix canariensis Chabaud (Arecaceae) and phylogenetic analysis
title_full_unstemmed The complete plastid genome of Phoenix canariensis Chabaud (Arecaceae) and phylogenetic analysis
title_short The complete plastid genome of Phoenix canariensis Chabaud (Arecaceae) and phylogenetic analysis
title_sort complete plastid genome of phoenix canariensis chabaud (arecaceae) and phylogenetic analysis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7819129/
https://www.ncbi.nlm.nih.gov/pubmed/33521288
http://dx.doi.org/10.1080/23802359.2020.1852900
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