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An in-vivo study of BOLD laminar responses as a function of echo time and static magnetic field strength

Layer specific functional MRI requires high spatial resolution data. To compensate the associated poor signal to noise ratio it is common to integrate the signal from voxels at a given cortical depth. If the region is sufficiently large then physiological noise will be the dominant noise source. In...

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Autores principales: Markuerkiaga, Irati, Marques, José P., Bains, Lauren J., Norris, David G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7820587/
https://www.ncbi.nlm.nih.gov/pubmed/33479362
http://dx.doi.org/10.1038/s41598-021-81249-w
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author Markuerkiaga, Irati
Marques, José P.
Bains, Lauren J.
Norris, David G.
author_facet Markuerkiaga, Irati
Marques, José P.
Bains, Lauren J.
Norris, David G.
author_sort Markuerkiaga, Irati
collection PubMed
description Layer specific functional MRI requires high spatial resolution data. To compensate the associated poor signal to noise ratio it is common to integrate the signal from voxels at a given cortical depth. If the region is sufficiently large then physiological noise will be the dominant noise source. In this work, activation profiles in response to the same visual stimulus are compared at 1.5 T, 3 T and 7 T using a multi-echo, gradient echo (GE) FLASH sequence, with a 0.75 mm isotropic voxel size and the cortical integration approach. The results show that after integrating over a cortical volume of 40, 60 and 100 mm(3) (at 7 T, 3 T, and 1.5 T, respectively), the signal is in the physiological noise dominated regime. The activation profiles obtained are similar for equivalent echo times. BOLD-like noise is found to be the dominant source of physiological noise. Consequently, the functional contrast to noise ratio is not strongly echo-time or field-strength dependent. We conclude that laminar GE-BOLD fMRI at lower field strengths is feasible but that larger patches of cortex will need to be examined, and that the acquisition efficiency is reduced.
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spelling pubmed-78205872021-01-26 An in-vivo study of BOLD laminar responses as a function of echo time and static magnetic field strength Markuerkiaga, Irati Marques, José P. Bains, Lauren J. Norris, David G. Sci Rep Article Layer specific functional MRI requires high spatial resolution data. To compensate the associated poor signal to noise ratio it is common to integrate the signal from voxels at a given cortical depth. If the region is sufficiently large then physiological noise will be the dominant noise source. In this work, activation profiles in response to the same visual stimulus are compared at 1.5 T, 3 T and 7 T using a multi-echo, gradient echo (GE) FLASH sequence, with a 0.75 mm isotropic voxel size and the cortical integration approach. The results show that after integrating over a cortical volume of 40, 60 and 100 mm(3) (at 7 T, 3 T, and 1.5 T, respectively), the signal is in the physiological noise dominated regime. The activation profiles obtained are similar for equivalent echo times. BOLD-like noise is found to be the dominant source of physiological noise. Consequently, the functional contrast to noise ratio is not strongly echo-time or field-strength dependent. We conclude that laminar GE-BOLD fMRI at lower field strengths is feasible but that larger patches of cortex will need to be examined, and that the acquisition efficiency is reduced. Nature Publishing Group UK 2021-01-21 /pmc/articles/PMC7820587/ /pubmed/33479362 http://dx.doi.org/10.1038/s41598-021-81249-w Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Markuerkiaga, Irati
Marques, José P.
Bains, Lauren J.
Norris, David G.
An in-vivo study of BOLD laminar responses as a function of echo time and static magnetic field strength
title An in-vivo study of BOLD laminar responses as a function of echo time and static magnetic field strength
title_full An in-vivo study of BOLD laminar responses as a function of echo time and static magnetic field strength
title_fullStr An in-vivo study of BOLD laminar responses as a function of echo time and static magnetic field strength
title_full_unstemmed An in-vivo study of BOLD laminar responses as a function of echo time and static magnetic field strength
title_short An in-vivo study of BOLD laminar responses as a function of echo time and static magnetic field strength
title_sort in-vivo study of bold laminar responses as a function of echo time and static magnetic field strength
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7820587/
https://www.ncbi.nlm.nih.gov/pubmed/33479362
http://dx.doi.org/10.1038/s41598-021-81249-w
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