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Contaminations contaminate common databases
The polymerase chain reaction (PCR) is a very powerful method to detect and identify pathogens. The high sensitivity of the method, however, comes with a cost; any of the millions of artificial DNA copies generated by PCR can serve as a template in a following experiment. If not identified as contam...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7820996/ https://www.ncbi.nlm.nih.gov/pubmed/33037786 http://dx.doi.org/10.1111/1755-0998.13272 |
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author | Bensch, Staffan Inumaru, Mizue Sato, Yukita Lee Cruz, Larisa Cunningham, Andrew A. Goodman, Simon J. Levin, Iris I. Parker, Patricia G. Casanueva, Patricia Hernández, Maria‐Angeles Moreno‐Rueda, Gregorio Rojo, Maria‐Angeles |
author_facet | Bensch, Staffan Inumaru, Mizue Sato, Yukita Lee Cruz, Larisa Cunningham, Andrew A. Goodman, Simon J. Levin, Iris I. Parker, Patricia G. Casanueva, Patricia Hernández, Maria‐Angeles Moreno‐Rueda, Gregorio Rojo, Maria‐Angeles |
author_sort | Bensch, Staffan |
collection | PubMed |
description | The polymerase chain reaction (PCR) is a very powerful method to detect and identify pathogens. The high sensitivity of the method, however, comes with a cost; any of the millions of artificial DNA copies generated by PCR can serve as a template in a following experiment. If not identified as contaminations, these may result in erroneous conclusions on the occurrence of the pathogen, thereby inflating estimates of host range and geographic distribution. In the present paper, we evaluate whether several published records of avian haemosporidian parasites, in either unusual host species or geographical regions, might stem from PCR contaminations rather than novel biological findings. The detailed descriptions of these cases are shedding light upon the steps in the work process that might lead to PCR contaminations. By increasing the awareness of this problem, it will aid in developing procedures that keep these to a minimum. The examples in the present paper are from haemosporidians of birds, however the problem of contaminations and suggested actions should apply generally to all kinds of PCR‐based identifications, not just of parasites and pathogens. |
format | Online Article Text |
id | pubmed-7820996 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-78209962021-01-26 Contaminations contaminate common databases Bensch, Staffan Inumaru, Mizue Sato, Yukita Lee Cruz, Larisa Cunningham, Andrew A. Goodman, Simon J. Levin, Iris I. Parker, Patricia G. Casanueva, Patricia Hernández, Maria‐Angeles Moreno‐Rueda, Gregorio Rojo, Maria‐Angeles Mol Ecol Resour News and Views The polymerase chain reaction (PCR) is a very powerful method to detect and identify pathogens. The high sensitivity of the method, however, comes with a cost; any of the millions of artificial DNA copies generated by PCR can serve as a template in a following experiment. If not identified as contaminations, these may result in erroneous conclusions on the occurrence of the pathogen, thereby inflating estimates of host range and geographic distribution. In the present paper, we evaluate whether several published records of avian haemosporidian parasites, in either unusual host species or geographical regions, might stem from PCR contaminations rather than novel biological findings. The detailed descriptions of these cases are shedding light upon the steps in the work process that might lead to PCR contaminations. By increasing the awareness of this problem, it will aid in developing procedures that keep these to a minimum. The examples in the present paper are from haemosporidians of birds, however the problem of contaminations and suggested actions should apply generally to all kinds of PCR‐based identifications, not just of parasites and pathogens. John Wiley and Sons Inc. 2020-10-31 2021-02 /pmc/articles/PMC7820996/ /pubmed/33037786 http://dx.doi.org/10.1111/1755-0998.13272 Text en © 2020 The Authors. Molecular Ecology Resources published by John Wiley & Sons Ltd This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | News and Views Bensch, Staffan Inumaru, Mizue Sato, Yukita Lee Cruz, Larisa Cunningham, Andrew A. Goodman, Simon J. Levin, Iris I. Parker, Patricia G. Casanueva, Patricia Hernández, Maria‐Angeles Moreno‐Rueda, Gregorio Rojo, Maria‐Angeles Contaminations contaminate common databases |
title | Contaminations contaminate common databases |
title_full | Contaminations contaminate common databases |
title_fullStr | Contaminations contaminate common databases |
title_full_unstemmed | Contaminations contaminate common databases |
title_short | Contaminations contaminate common databases |
title_sort | contaminations contaminate common databases |
topic | News and Views |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7820996/ https://www.ncbi.nlm.nih.gov/pubmed/33037786 http://dx.doi.org/10.1111/1755-0998.13272 |
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