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Identification of a Novel Glycolysis-Related Gene Signature for Predicting Breast Cancer Survival
To identify a glycolysis-related gene signature for the evaluation of prognosis in patients with breast cancer, we analyzed the data of a training set from TCGA database and four validation cohorts from the GEO and ICGC databases which included 1,632 patients with breast cancer. We conducted GSEA, u...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7821871/ https://www.ncbi.nlm.nih.gov/pubmed/33489894 http://dx.doi.org/10.3389/fonc.2020.596087 |
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author | Zhang, Dai Zheng, Yi Yang, Si Li, Yiche Wang, Meng Yao, Jia Deng, Yujiao Li, Na Wei, Bajin Wu, Ying Zhu, Yuyao Li, Hongtao Dai, Zhijun |
author_facet | Zhang, Dai Zheng, Yi Yang, Si Li, Yiche Wang, Meng Yao, Jia Deng, Yujiao Li, Na Wei, Bajin Wu, Ying Zhu, Yuyao Li, Hongtao Dai, Zhijun |
author_sort | Zhang, Dai |
collection | PubMed |
description | To identify a glycolysis-related gene signature for the evaluation of prognosis in patients with breast cancer, we analyzed the data of a training set from TCGA database and four validation cohorts from the GEO and ICGC databases which included 1,632 patients with breast cancer. We conducted GSEA, univariate Cox regression, LASSO, and multiple Cox regression analysis. Finally, an 11-gene signature related to glycolysis for predicting survival in patients with breast cancer was developed. And Kaplan–Meier analysis and ROC analyses suggested that the signature showed a good prognostic ability for BC in the TCGA, ICGC, and GEO datasets. The analyses of univariate Cox regression and multivariate Cox regression revealed that it’s an important prognostic factor independent of multiple clinical features. Moreover, a prognostic nomogram, combining the gene signature and clinical characteristics of patients, was constructed. These findings provide insights into the identification of breast cancer patients with a poor prognosis. |
format | Online Article Text |
id | pubmed-7821871 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-78218712021-01-23 Identification of a Novel Glycolysis-Related Gene Signature for Predicting Breast Cancer Survival Zhang, Dai Zheng, Yi Yang, Si Li, Yiche Wang, Meng Yao, Jia Deng, Yujiao Li, Na Wei, Bajin Wu, Ying Zhu, Yuyao Li, Hongtao Dai, Zhijun Front Oncol Oncology To identify a glycolysis-related gene signature for the evaluation of prognosis in patients with breast cancer, we analyzed the data of a training set from TCGA database and four validation cohorts from the GEO and ICGC databases which included 1,632 patients with breast cancer. We conducted GSEA, univariate Cox regression, LASSO, and multiple Cox regression analysis. Finally, an 11-gene signature related to glycolysis for predicting survival in patients with breast cancer was developed. And Kaplan–Meier analysis and ROC analyses suggested that the signature showed a good prognostic ability for BC in the TCGA, ICGC, and GEO datasets. The analyses of univariate Cox regression and multivariate Cox regression revealed that it’s an important prognostic factor independent of multiple clinical features. Moreover, a prognostic nomogram, combining the gene signature and clinical characteristics of patients, was constructed. These findings provide insights into the identification of breast cancer patients with a poor prognosis. Frontiers Media S.A. 2021-01-08 /pmc/articles/PMC7821871/ /pubmed/33489894 http://dx.doi.org/10.3389/fonc.2020.596087 Text en Copyright © 2021 Zhang, Zheng, Yang, Li, Wang, Yao, Deng, Li, Wei, Wu, Zhu, Li and Dai http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Zhang, Dai Zheng, Yi Yang, Si Li, Yiche Wang, Meng Yao, Jia Deng, Yujiao Li, Na Wei, Bajin Wu, Ying Zhu, Yuyao Li, Hongtao Dai, Zhijun Identification of a Novel Glycolysis-Related Gene Signature for Predicting Breast Cancer Survival |
title | Identification of a Novel Glycolysis-Related Gene Signature for Predicting Breast Cancer Survival |
title_full | Identification of a Novel Glycolysis-Related Gene Signature for Predicting Breast Cancer Survival |
title_fullStr | Identification of a Novel Glycolysis-Related Gene Signature for Predicting Breast Cancer Survival |
title_full_unstemmed | Identification of a Novel Glycolysis-Related Gene Signature for Predicting Breast Cancer Survival |
title_short | Identification of a Novel Glycolysis-Related Gene Signature for Predicting Breast Cancer Survival |
title_sort | identification of a novel glycolysis-related gene signature for predicting breast cancer survival |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7821871/ https://www.ncbi.nlm.nih.gov/pubmed/33489894 http://dx.doi.org/10.3389/fonc.2020.596087 |
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