Cargando…
IDentif.AI: Rapidly optimizing combination therapy design against severe Acute Respiratory Syndrome Coronavirus 2 (SARS‐Cov‐2) with digital drug development
The emergence of severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) led to multiple drug repurposing clinical trials that have yielded largely uncertain outcomes. To overcome this challenge, we used IDentif.AI, a platform that pairs experimental validation with artificial intelligence (AI)...
Autores principales: | , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley & Sons, Inc.
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7823122/ https://www.ncbi.nlm.nih.gov/pubmed/33532594 http://dx.doi.org/10.1002/btm2.10196 |
_version_ | 1783639767737434112 |
---|---|
author | Blasiak, Agata Lim, Jhin Jieh Seah, Shirley Gek Kheng Kee, Theodore Remus, Alexandria Chye, De Hoe Wong, Pui San Hooi, Lissa Truong, Anh T. L. Le, Nguyen Chan, Conrad E. Z. Desai, Rishi Ding, Xianting Hanson, Brendon J. Chow, Edward Kai‐Hua Ho, Dean |
author_facet | Blasiak, Agata Lim, Jhin Jieh Seah, Shirley Gek Kheng Kee, Theodore Remus, Alexandria Chye, De Hoe Wong, Pui San Hooi, Lissa Truong, Anh T. L. Le, Nguyen Chan, Conrad E. Z. Desai, Rishi Ding, Xianting Hanson, Brendon J. Chow, Edward Kai‐Hua Ho, Dean |
author_sort | Blasiak, Agata |
collection | PubMed |
description | The emergence of severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) led to multiple drug repurposing clinical trials that have yielded largely uncertain outcomes. To overcome this challenge, we used IDentif.AI, a platform that pairs experimental validation with artificial intelligence (AI) and digital drug development to rapidly pinpoint unpredictable drug interactions and optimize infectious disease combination therapy design with clinically relevant dosages. IDentif.AI was paired with a 12‐drug candidate therapy set representing over 530,000 drug combinations against the SARS‐CoV‐2 live virus collected from a patient sample. IDentif.AI pinpointed the optimal combination as remdesivir, ritonavir, and lopinavir, which was experimentally validated to mediate a 6.5‐fold enhanced efficacy over remdesivir alone. Additionally, it showed hydroxychloroquine and azithromycin to be relatively ineffective. The study was completed within 2 weeks, with a three‐order of magnitude reduction in the number of tests needed. IDentif.AI independently mirrored clinical trial outcomes to date without any data from these trials. The robustness of this digital drug development approach paired with in vitro experimentation and AI‐driven optimization suggests that IDentif.AI may be clinically actionable toward current and future outbreaks. |
format | Online Article Text |
id | pubmed-7823122 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley & Sons, Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-78231222021-02-01 IDentif.AI: Rapidly optimizing combination therapy design against severe Acute Respiratory Syndrome Coronavirus 2 (SARS‐Cov‐2) with digital drug development Blasiak, Agata Lim, Jhin Jieh Seah, Shirley Gek Kheng Kee, Theodore Remus, Alexandria Chye, De Hoe Wong, Pui San Hooi, Lissa Truong, Anh T. L. Le, Nguyen Chan, Conrad E. Z. Desai, Rishi Ding, Xianting Hanson, Brendon J. Chow, Edward Kai‐Hua Ho, Dean Bioeng Transl Med Research Reports The emergence of severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) led to multiple drug repurposing clinical trials that have yielded largely uncertain outcomes. To overcome this challenge, we used IDentif.AI, a platform that pairs experimental validation with artificial intelligence (AI) and digital drug development to rapidly pinpoint unpredictable drug interactions and optimize infectious disease combination therapy design with clinically relevant dosages. IDentif.AI was paired with a 12‐drug candidate therapy set representing over 530,000 drug combinations against the SARS‐CoV‐2 live virus collected from a patient sample. IDentif.AI pinpointed the optimal combination as remdesivir, ritonavir, and lopinavir, which was experimentally validated to mediate a 6.5‐fold enhanced efficacy over remdesivir alone. Additionally, it showed hydroxychloroquine and azithromycin to be relatively ineffective. The study was completed within 2 weeks, with a three‐order of magnitude reduction in the number of tests needed. IDentif.AI independently mirrored clinical trial outcomes to date without any data from these trials. The robustness of this digital drug development approach paired with in vitro experimentation and AI‐driven optimization suggests that IDentif.AI may be clinically actionable toward current and future outbreaks. John Wiley & Sons, Inc. 2020-12-01 /pmc/articles/PMC7823122/ /pubmed/33532594 http://dx.doi.org/10.1002/btm2.10196 Text en © 2020 The Authors. Bioengineering & Translational Medicine published by Wiley Periodicals LLC on behalf of The American Institute of Chemical Engineers. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Reports Blasiak, Agata Lim, Jhin Jieh Seah, Shirley Gek Kheng Kee, Theodore Remus, Alexandria Chye, De Hoe Wong, Pui San Hooi, Lissa Truong, Anh T. L. Le, Nguyen Chan, Conrad E. Z. Desai, Rishi Ding, Xianting Hanson, Brendon J. Chow, Edward Kai‐Hua Ho, Dean IDentif.AI: Rapidly optimizing combination therapy design against severe Acute Respiratory Syndrome Coronavirus 2 (SARS‐Cov‐2) with digital drug development |
title |
IDentif.AI: Rapidly optimizing combination therapy design against severe Acute Respiratory Syndrome Coronavirus 2 (SARS‐Cov‐2) with digital drug development |
title_full |
IDentif.AI: Rapidly optimizing combination therapy design against severe Acute Respiratory Syndrome Coronavirus 2 (SARS‐Cov‐2) with digital drug development |
title_fullStr |
IDentif.AI: Rapidly optimizing combination therapy design against severe Acute Respiratory Syndrome Coronavirus 2 (SARS‐Cov‐2) with digital drug development |
title_full_unstemmed |
IDentif.AI: Rapidly optimizing combination therapy design against severe Acute Respiratory Syndrome Coronavirus 2 (SARS‐Cov‐2) with digital drug development |
title_short |
IDentif.AI: Rapidly optimizing combination therapy design against severe Acute Respiratory Syndrome Coronavirus 2 (SARS‐Cov‐2) with digital drug development |
title_sort | identif.ai: rapidly optimizing combination therapy design against severe acute respiratory syndrome coronavirus 2 (sars‐cov‐2) with digital drug development |
topic | Research Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7823122/ https://www.ncbi.nlm.nih.gov/pubmed/33532594 http://dx.doi.org/10.1002/btm2.10196 |
work_keys_str_mv | AT blasiakagata identifairapidlyoptimizingcombinationtherapydesignagainstsevereacuterespiratorysyndromecoronavirus2sarscov2withdigitaldrugdevelopment AT limjhinjieh identifairapidlyoptimizingcombinationtherapydesignagainstsevereacuterespiratorysyndromecoronavirus2sarscov2withdigitaldrugdevelopment AT seahshirleygekkheng identifairapidlyoptimizingcombinationtherapydesignagainstsevereacuterespiratorysyndromecoronavirus2sarscov2withdigitaldrugdevelopment AT keetheodore identifairapidlyoptimizingcombinationtherapydesignagainstsevereacuterespiratorysyndromecoronavirus2sarscov2withdigitaldrugdevelopment AT remusalexandria identifairapidlyoptimizingcombinationtherapydesignagainstsevereacuterespiratorysyndromecoronavirus2sarscov2withdigitaldrugdevelopment AT chyedehoe identifairapidlyoptimizingcombinationtherapydesignagainstsevereacuterespiratorysyndromecoronavirus2sarscov2withdigitaldrugdevelopment AT wongpuisan identifairapidlyoptimizingcombinationtherapydesignagainstsevereacuterespiratorysyndromecoronavirus2sarscov2withdigitaldrugdevelopment AT hooilissa identifairapidlyoptimizingcombinationtherapydesignagainstsevereacuterespiratorysyndromecoronavirus2sarscov2withdigitaldrugdevelopment AT truonganhtl identifairapidlyoptimizingcombinationtherapydesignagainstsevereacuterespiratorysyndromecoronavirus2sarscov2withdigitaldrugdevelopment AT lenguyen identifairapidlyoptimizingcombinationtherapydesignagainstsevereacuterespiratorysyndromecoronavirus2sarscov2withdigitaldrugdevelopment AT chanconradez identifairapidlyoptimizingcombinationtherapydesignagainstsevereacuterespiratorysyndromecoronavirus2sarscov2withdigitaldrugdevelopment AT desairishi identifairapidlyoptimizingcombinationtherapydesignagainstsevereacuterespiratorysyndromecoronavirus2sarscov2withdigitaldrugdevelopment AT dingxianting identifairapidlyoptimizingcombinationtherapydesignagainstsevereacuterespiratorysyndromecoronavirus2sarscov2withdigitaldrugdevelopment AT hansonbrendonj identifairapidlyoptimizingcombinationtherapydesignagainstsevereacuterespiratorysyndromecoronavirus2sarscov2withdigitaldrugdevelopment AT chowedwardkaihua identifairapidlyoptimizingcombinationtherapydesignagainstsevereacuterespiratorysyndromecoronavirus2sarscov2withdigitaldrugdevelopment AT hodean identifairapidlyoptimizingcombinationtherapydesignagainstsevereacuterespiratorysyndromecoronavirus2sarscov2withdigitaldrugdevelopment |