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IDentif.AI: Rapidly optimizing combination therapy design against severe Acute Respiratory Syndrome Coronavirus 2 (SARS‐Cov‐2) with digital drug development

The emergence of severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) led to multiple drug repurposing clinical trials that have yielded largely uncertain outcomes. To overcome this challenge, we used IDentif.AI, a platform that pairs experimental validation with artificial intelligence (AI)...

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Autores principales: Blasiak, Agata, Lim, Jhin Jieh, Seah, Shirley Gek Kheng, Kee, Theodore, Remus, Alexandria, Chye, De Hoe, Wong, Pui San, Hooi, Lissa, Truong, Anh T. L., Le, Nguyen, Chan, Conrad E. Z., Desai, Rishi, Ding, Xianting, Hanson, Brendon J., Chow, Edward Kai‐Hua, Ho, Dean
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7823122/
https://www.ncbi.nlm.nih.gov/pubmed/33532594
http://dx.doi.org/10.1002/btm2.10196
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author Blasiak, Agata
Lim, Jhin Jieh
Seah, Shirley Gek Kheng
Kee, Theodore
Remus, Alexandria
Chye, De Hoe
Wong, Pui San
Hooi, Lissa
Truong, Anh T. L.
Le, Nguyen
Chan, Conrad E. Z.
Desai, Rishi
Ding, Xianting
Hanson, Brendon J.
Chow, Edward Kai‐Hua
Ho, Dean
author_facet Blasiak, Agata
Lim, Jhin Jieh
Seah, Shirley Gek Kheng
Kee, Theodore
Remus, Alexandria
Chye, De Hoe
Wong, Pui San
Hooi, Lissa
Truong, Anh T. L.
Le, Nguyen
Chan, Conrad E. Z.
Desai, Rishi
Ding, Xianting
Hanson, Brendon J.
Chow, Edward Kai‐Hua
Ho, Dean
author_sort Blasiak, Agata
collection PubMed
description The emergence of severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) led to multiple drug repurposing clinical trials that have yielded largely uncertain outcomes. To overcome this challenge, we used IDentif.AI, a platform that pairs experimental validation with artificial intelligence (AI) and digital drug development to rapidly pinpoint unpredictable drug interactions and optimize infectious disease combination therapy design with clinically relevant dosages. IDentif.AI was paired with a 12‐drug candidate therapy set representing over 530,000 drug combinations against the SARS‐CoV‐2 live virus collected from a patient sample. IDentif.AI pinpointed the optimal combination as remdesivir, ritonavir, and lopinavir, which was experimentally validated to mediate a 6.5‐fold enhanced efficacy over remdesivir alone. Additionally, it showed hydroxychloroquine and azithromycin to be relatively ineffective. The study was completed within 2 weeks, with a three‐order of magnitude reduction in the number of tests needed. IDentif.AI independently mirrored clinical trial outcomes to date without any data from these trials. The robustness of this digital drug development approach paired with in vitro experimentation and AI‐driven optimization suggests that IDentif.AI may be clinically actionable toward current and future outbreaks.
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spelling pubmed-78231222021-02-01 IDentif.AI: Rapidly optimizing combination therapy design against severe Acute Respiratory Syndrome Coronavirus 2 (SARS‐Cov‐2) with digital drug development Blasiak, Agata Lim, Jhin Jieh Seah, Shirley Gek Kheng Kee, Theodore Remus, Alexandria Chye, De Hoe Wong, Pui San Hooi, Lissa Truong, Anh T. L. Le, Nguyen Chan, Conrad E. Z. Desai, Rishi Ding, Xianting Hanson, Brendon J. Chow, Edward Kai‐Hua Ho, Dean Bioeng Transl Med Research Reports The emergence of severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) led to multiple drug repurposing clinical trials that have yielded largely uncertain outcomes. To overcome this challenge, we used IDentif.AI, a platform that pairs experimental validation with artificial intelligence (AI) and digital drug development to rapidly pinpoint unpredictable drug interactions and optimize infectious disease combination therapy design with clinically relevant dosages. IDentif.AI was paired with a 12‐drug candidate therapy set representing over 530,000 drug combinations against the SARS‐CoV‐2 live virus collected from a patient sample. IDentif.AI pinpointed the optimal combination as remdesivir, ritonavir, and lopinavir, which was experimentally validated to mediate a 6.5‐fold enhanced efficacy over remdesivir alone. Additionally, it showed hydroxychloroquine and azithromycin to be relatively ineffective. The study was completed within 2 weeks, with a three‐order of magnitude reduction in the number of tests needed. IDentif.AI independently mirrored clinical trial outcomes to date without any data from these trials. The robustness of this digital drug development approach paired with in vitro experimentation and AI‐driven optimization suggests that IDentif.AI may be clinically actionable toward current and future outbreaks. John Wiley & Sons, Inc. 2020-12-01 /pmc/articles/PMC7823122/ /pubmed/33532594 http://dx.doi.org/10.1002/btm2.10196 Text en © 2020 The Authors. Bioengineering & Translational Medicine published by Wiley Periodicals LLC on behalf of The American Institute of Chemical Engineers. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Reports
Blasiak, Agata
Lim, Jhin Jieh
Seah, Shirley Gek Kheng
Kee, Theodore
Remus, Alexandria
Chye, De Hoe
Wong, Pui San
Hooi, Lissa
Truong, Anh T. L.
Le, Nguyen
Chan, Conrad E. Z.
Desai, Rishi
Ding, Xianting
Hanson, Brendon J.
Chow, Edward Kai‐Hua
Ho, Dean
IDentif.AI: Rapidly optimizing combination therapy design against severe Acute Respiratory Syndrome Coronavirus 2 (SARS‐Cov‐2) with digital drug development
title IDentif.AI: Rapidly optimizing combination therapy design against severe Acute Respiratory Syndrome Coronavirus 2 (SARS‐Cov‐2) with digital drug development
title_full IDentif.AI: Rapidly optimizing combination therapy design against severe Acute Respiratory Syndrome Coronavirus 2 (SARS‐Cov‐2) with digital drug development
title_fullStr IDentif.AI: Rapidly optimizing combination therapy design against severe Acute Respiratory Syndrome Coronavirus 2 (SARS‐Cov‐2) with digital drug development
title_full_unstemmed IDentif.AI: Rapidly optimizing combination therapy design against severe Acute Respiratory Syndrome Coronavirus 2 (SARS‐Cov‐2) with digital drug development
title_short IDentif.AI: Rapidly optimizing combination therapy design against severe Acute Respiratory Syndrome Coronavirus 2 (SARS‐Cov‐2) with digital drug development
title_sort identif.ai: rapidly optimizing combination therapy design against severe acute respiratory syndrome coronavirus 2 (sars‐cov‐2) with digital drug development
topic Research Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7823122/
https://www.ncbi.nlm.nih.gov/pubmed/33532594
http://dx.doi.org/10.1002/btm2.10196
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