Cargando…

Genome-Wide Identification of the YABBY Gene Family in Seven Species of Magnoliids and Expression Analysis in Litsea

The YABBY gene family, specific to seed plants, encodes a class of transcription factors in the lamina maintenance and development of lateral organs. Magnoliids are sisters to the clade-containing eudicots and monocots, which have rapidly diversified among the common ancestors of these three lineage...

Descripción completa

Detalles Bibliográficos
Autores principales: Liu, Xuedie, Liao, Xing-Yu, Zheng, Yu, Zhu, Meng-Jia, Yu, Xia, Jiang, Yu-Ting, Zhang, Di-Yang, Ma, Liang, Xu, Xin-Yu, Liu, Zhong-Jian, Lan, Siren
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7824534/
https://www.ncbi.nlm.nih.gov/pubmed/33374250
http://dx.doi.org/10.3390/plants10010021
_version_ 1783640100727422976
author Liu, Xuedie
Liao, Xing-Yu
Zheng, Yu
Zhu, Meng-Jia
Yu, Xia
Jiang, Yu-Ting
Zhang, Di-Yang
Ma, Liang
Xu, Xin-Yu
Liu, Zhong-Jian
Lan, Siren
author_facet Liu, Xuedie
Liao, Xing-Yu
Zheng, Yu
Zhu, Meng-Jia
Yu, Xia
Jiang, Yu-Ting
Zhang, Di-Yang
Ma, Liang
Xu, Xin-Yu
Liu, Zhong-Jian
Lan, Siren
author_sort Liu, Xuedie
collection PubMed
description The YABBY gene family, specific to seed plants, encodes a class of transcription factors in the lamina maintenance and development of lateral organs. Magnoliids are sisters to the clade-containing eudicots and monocots, which have rapidly diversified among the common ancestors of these three lineages. However, prior to this study, information on the function of the YABBY genes in magnoliids was extremely limited to the third major clades and the early diverging lineage of Mesangiospermae. In this study, the sum of 55 YABBY genes including five genes in INO, six in CRC, eight in YAB2, 22 in YAB5, and 14 in FIL clade were identified from seven magnoliid plants. Sequence analysis showed that all encoded YABBY protein sequences possess the highly conserved YABBY domain and C2C2 zinc-finger domain. Gene and protein structure analysis indicates that a certain number of exons were highly conserved and similar in the same class, and YABBY genes encode proteins of 71–392 amino acids and an open reading frame of 216–1179 bp in magnoliids. Additionally, the predicted molecular weight and isoelectric point of YABBY proteins in three species ranged from 7689.93 to 43578.13 and from 5.33 to 9.87, respectively. Meanwhile, the YABBY gene homolog expression of Litsea was detected at a temporal and spatial level during various developmental stages of leaf and reproductive tissues. This research could provide a brief overview of YABBY gene family evolution and its differential expression in magnoliids. Therefore, this comprehensive diversification analysis would provide a new insight into further understanding of the function of genes in seven magnoliids.
format Online
Article
Text
id pubmed-7824534
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-78245342021-01-24 Genome-Wide Identification of the YABBY Gene Family in Seven Species of Magnoliids and Expression Analysis in Litsea Liu, Xuedie Liao, Xing-Yu Zheng, Yu Zhu, Meng-Jia Yu, Xia Jiang, Yu-Ting Zhang, Di-Yang Ma, Liang Xu, Xin-Yu Liu, Zhong-Jian Lan, Siren Plants (Basel) Article The YABBY gene family, specific to seed plants, encodes a class of transcription factors in the lamina maintenance and development of lateral organs. Magnoliids are sisters to the clade-containing eudicots and monocots, which have rapidly diversified among the common ancestors of these three lineages. However, prior to this study, information on the function of the YABBY genes in magnoliids was extremely limited to the third major clades and the early diverging lineage of Mesangiospermae. In this study, the sum of 55 YABBY genes including five genes in INO, six in CRC, eight in YAB2, 22 in YAB5, and 14 in FIL clade were identified from seven magnoliid plants. Sequence analysis showed that all encoded YABBY protein sequences possess the highly conserved YABBY domain and C2C2 zinc-finger domain. Gene and protein structure analysis indicates that a certain number of exons were highly conserved and similar in the same class, and YABBY genes encode proteins of 71–392 amino acids and an open reading frame of 216–1179 bp in magnoliids. Additionally, the predicted molecular weight and isoelectric point of YABBY proteins in three species ranged from 7689.93 to 43578.13 and from 5.33 to 9.87, respectively. Meanwhile, the YABBY gene homolog expression of Litsea was detected at a temporal and spatial level during various developmental stages of leaf and reproductive tissues. This research could provide a brief overview of YABBY gene family evolution and its differential expression in magnoliids. Therefore, this comprehensive diversification analysis would provide a new insight into further understanding of the function of genes in seven magnoliids. MDPI 2020-12-24 /pmc/articles/PMC7824534/ /pubmed/33374250 http://dx.doi.org/10.3390/plants10010021 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Liu, Xuedie
Liao, Xing-Yu
Zheng, Yu
Zhu, Meng-Jia
Yu, Xia
Jiang, Yu-Ting
Zhang, Di-Yang
Ma, Liang
Xu, Xin-Yu
Liu, Zhong-Jian
Lan, Siren
Genome-Wide Identification of the YABBY Gene Family in Seven Species of Magnoliids and Expression Analysis in Litsea
title Genome-Wide Identification of the YABBY Gene Family in Seven Species of Magnoliids and Expression Analysis in Litsea
title_full Genome-Wide Identification of the YABBY Gene Family in Seven Species of Magnoliids and Expression Analysis in Litsea
title_fullStr Genome-Wide Identification of the YABBY Gene Family in Seven Species of Magnoliids and Expression Analysis in Litsea
title_full_unstemmed Genome-Wide Identification of the YABBY Gene Family in Seven Species of Magnoliids and Expression Analysis in Litsea
title_short Genome-Wide Identification of the YABBY Gene Family in Seven Species of Magnoliids and Expression Analysis in Litsea
title_sort genome-wide identification of the yabby gene family in seven species of magnoliids and expression analysis in litsea
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7824534/
https://www.ncbi.nlm.nih.gov/pubmed/33374250
http://dx.doi.org/10.3390/plants10010021
work_keys_str_mv AT liuxuedie genomewideidentificationoftheyabbygenefamilyinsevenspeciesofmagnoliidsandexpressionanalysisinlitsea
AT liaoxingyu genomewideidentificationoftheyabbygenefamilyinsevenspeciesofmagnoliidsandexpressionanalysisinlitsea
AT zhengyu genomewideidentificationoftheyabbygenefamilyinsevenspeciesofmagnoliidsandexpressionanalysisinlitsea
AT zhumengjia genomewideidentificationoftheyabbygenefamilyinsevenspeciesofmagnoliidsandexpressionanalysisinlitsea
AT yuxia genomewideidentificationoftheyabbygenefamilyinsevenspeciesofmagnoliidsandexpressionanalysisinlitsea
AT jiangyuting genomewideidentificationoftheyabbygenefamilyinsevenspeciesofmagnoliidsandexpressionanalysisinlitsea
AT zhangdiyang genomewideidentificationoftheyabbygenefamilyinsevenspeciesofmagnoliidsandexpressionanalysisinlitsea
AT maliang genomewideidentificationoftheyabbygenefamilyinsevenspeciesofmagnoliidsandexpressionanalysisinlitsea
AT xuxinyu genomewideidentificationoftheyabbygenefamilyinsevenspeciesofmagnoliidsandexpressionanalysisinlitsea
AT liuzhongjian genomewideidentificationoftheyabbygenefamilyinsevenspeciesofmagnoliidsandexpressionanalysisinlitsea
AT lansiren genomewideidentificationoftheyabbygenefamilyinsevenspeciesofmagnoliidsandexpressionanalysisinlitsea