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Comparison of Morphological and Genetic Characteristics of Avocados Grown in Tanzania

Tanzania has been growing avocado for decades. A wide variability of the avocado germplasm has been found, and the crop is largely contributing to the earnings of the farmers, traders, and the government, but its genetic diversity is scantly investigated. With the purpose of comparing morphological...

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Autores principales: Juma, Ibrahim, Geleta, Mulatu, Hovmalm, Helena Persson, Nyomora, Agnes, Saripella, Ganapathi Varma, Carlsson, Anders S., Fatih, Moneim, Ortiz, Rodomiro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7824774/
https://www.ncbi.nlm.nih.gov/pubmed/33406797
http://dx.doi.org/10.3390/genes12010063
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author Juma, Ibrahim
Geleta, Mulatu
Hovmalm, Helena Persson
Nyomora, Agnes
Saripella, Ganapathi Varma
Carlsson, Anders S.
Fatih, Moneim
Ortiz, Rodomiro
author_facet Juma, Ibrahim
Geleta, Mulatu
Hovmalm, Helena Persson
Nyomora, Agnes
Saripella, Ganapathi Varma
Carlsson, Anders S.
Fatih, Moneim
Ortiz, Rodomiro
author_sort Juma, Ibrahim
collection PubMed
description Tanzania has been growing avocado for decades. A wide variability of the avocado germplasm has been found, and the crop is largely contributing to the earnings of the farmers, traders, and the government, but its genetic diversity is scantly investigated. With the purpose of comparing morphological and genetic characteristics of this germplasm and uncovering the correlation between them and the geographical location, 226 adult seedling avocado trees were sampled in southwestern Tanzania. Their morphological characters were recorded, and their genetic diversity was evaluated based on 10 microsatellite loci. Discriminant analysis of principal components showed that the germplasm studied consisted of four genetic clusters that had an overall average gene diversity of 0.59 and 15.9% molecular variation among them. Most of the phenotypes were common in at least two clusters. The genetic clusters were also portrayed by multivariate analysis and hierarchical clustering for the molecular data but not for the morphology data. Using the Mantel test, a weak significant correlation was found between the genetic, morphological, and geographical distances, which indicates that the genetic variation present in the material is weakly reflected by the observed phenotypic variation and that both measures of variation varied slightly with the geographical sampling locations.
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spelling pubmed-78247742021-01-24 Comparison of Morphological and Genetic Characteristics of Avocados Grown in Tanzania Juma, Ibrahim Geleta, Mulatu Hovmalm, Helena Persson Nyomora, Agnes Saripella, Ganapathi Varma Carlsson, Anders S. Fatih, Moneim Ortiz, Rodomiro Genes (Basel) Article Tanzania has been growing avocado for decades. A wide variability of the avocado germplasm has been found, and the crop is largely contributing to the earnings of the farmers, traders, and the government, but its genetic diversity is scantly investigated. With the purpose of comparing morphological and genetic characteristics of this germplasm and uncovering the correlation between them and the geographical location, 226 adult seedling avocado trees were sampled in southwestern Tanzania. Their morphological characters were recorded, and their genetic diversity was evaluated based on 10 microsatellite loci. Discriminant analysis of principal components showed that the germplasm studied consisted of four genetic clusters that had an overall average gene diversity of 0.59 and 15.9% molecular variation among them. Most of the phenotypes were common in at least two clusters. The genetic clusters were also portrayed by multivariate analysis and hierarchical clustering for the molecular data but not for the morphology data. Using the Mantel test, a weak significant correlation was found between the genetic, morphological, and geographical distances, which indicates that the genetic variation present in the material is weakly reflected by the observed phenotypic variation and that both measures of variation varied slightly with the geographical sampling locations. MDPI 2021-01-04 /pmc/articles/PMC7824774/ /pubmed/33406797 http://dx.doi.org/10.3390/genes12010063 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Juma, Ibrahim
Geleta, Mulatu
Hovmalm, Helena Persson
Nyomora, Agnes
Saripella, Ganapathi Varma
Carlsson, Anders S.
Fatih, Moneim
Ortiz, Rodomiro
Comparison of Morphological and Genetic Characteristics of Avocados Grown in Tanzania
title Comparison of Morphological and Genetic Characteristics of Avocados Grown in Tanzania
title_full Comparison of Morphological and Genetic Characteristics of Avocados Grown in Tanzania
title_fullStr Comparison of Morphological and Genetic Characteristics of Avocados Grown in Tanzania
title_full_unstemmed Comparison of Morphological and Genetic Characteristics of Avocados Grown in Tanzania
title_short Comparison of Morphological and Genetic Characteristics of Avocados Grown in Tanzania
title_sort comparison of morphological and genetic characteristics of avocados grown in tanzania
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7824774/
https://www.ncbi.nlm.nih.gov/pubmed/33406797
http://dx.doi.org/10.3390/genes12010063
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