Cargando…

Jumbo Phages: A Comparative Genomic Overview of Core Functions and Adaptions for Biological Conflicts

Jumbo phages have attracted much attention by virtue of their extraordinary genome size and unusual aspects of biology. By performing a comparative genomics analysis of 224 jumbo phages, we suggest an objective inclusion criterion based on genome size distributions and present a synthetic overview o...

Descripción completa

Detalles Bibliográficos
Autores principales:	M. Iyer, Lakshminarayan, Anantharaman, Vivek, Krishnan, Arunkumar, Burroughs, A. Maxwell, Aravind, L.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2021
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7824862/ https://www.ncbi.nlm.nih.gov/pubmed/33466489 http://dx.doi.org/10.3390/v13010063

Ejemplares similares

Highly regulated, diversifying NTP-dependent biological conflict systems with implications for the emergence of multicellularity
por: Kaur, Gurmeet, et al.
Publicado: (2020)

Comparative genomic analyses reveal a vast, novel network of nucleotide-centric systems in biological conflicts, immunity and signaling
por: Burroughs, A. Maxwell, et al.
Publicado: (2015)

Gene flow and biological conflict systems in the origin and evolution of eukaryotes
por: Aravind, L., et al.
Publicado: (2012)

Apprehending the NAD(+)–ADPr-Dependent Systems in the Virus World
por: Iyer, Lakshminarayan M., et al.
Publicado: (2022)

Unexpected Evolution of Lesion-Recognition Modules in Eukaryotic NER and Kinetoplast DNA Dynamics Proteins from Bacterial Mobile Elements
por: Krishnan, Arunkumar, et al.
Publicado: (2018)

Polyvalent Proteins, a Pervasive Theme in the Intergenomic Biological Conflicts of Bacteriophages and Conjugative Elements
por: Iyer, Lakshminarayan M., et al.
Publicado: (2017)

Two novel PIWI families: roles in inter-genomic conflicts in bacteria and Mediator-dependent modulation of transcription in eukaryotes
por: Burroughs, A Maxwell, et al.
Publicado: (2013)

Jumbo Bacteriophages: An Overview
por: Yuan, Yihui, et al.
Publicado: (2017)

Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing
por: Anantharaman, Vivek, et al.
Publicado: (2013)

RNA damage in biological conflicts and the diversity of responding RNA repair systems
por: Burroughs, A. Maxwell, et al.
Publicado: (2016)

The two faces of Alba: the evolutionary connection between proteins participating in chromatin structure and RNA metabolism
por: Aravind, L, et al.
Publicado: (2003)

Presence of a classical RRM-fold palm domain in Thg1-type 3'- 5'nucleic acid polymerases and the origin of the GGDEF and CRISPR polymerase domains
por: Anantharaman, Vivek, et al.
Publicado: (2010)

Ancient conserved domains shared by animal soluble guanylyl cyclases and bacterial signaling proteins
por: Iyer, Lakshminarayan M, et al.
Publicado: (2003)

The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like β-grasp domains
por: Iyer, Lakshminarayan M, et al.
Publicado: (2006)

A novel superfamily containing the β-grasp fold involved in binding diverse soluble ligands
por: Burroughs, A Maxwell, et al.
Publicado: (2007)

Small but versatile: the extraordinary functional and structural diversity of the β-grasp fold
por: Burroughs, A Maxwell, et al.
Publicado: (2007)

Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics
por: Zhang, Dapeng, et al.
Publicado: (2012)

Computational identification of novel biochemical systems involved in oxidation, glycosylation and other complex modifications of bases in DNA
por: Iyer, Lakshminarayan M., et al.
Publicado: (2013)

Bacterial death and TRADD-N domains help define novel apoptosis and immunity mechanisms shared by prokaryotes and metazoans
por: Kaur, Gurmeet, et al.
Publicado: (2021)

Complete Genome Sequence of Klebsiella pneumoniae Jumbo Phage Miami
por: Mora, Daniel, et al.
Publicado: (2021)

A phage nucleus-associated RNA-binding protein is required for jumbo phage infection
por: Enustun, Eray, et al.
Publicado: (2023)

Functional Innovation in the Evolution of the Calcium-Dependent System of the Eukaryotic Endoplasmic Reticulum
por: Schäffer, Daniel E., et al.
Publicado: (2020)

Unraveling the biochemistry and provenance of pupylation: a prokaryotic analog of ubiquitination
por: Iyer, Lakshminarayan M, et al.
Publicado: (2008)

Isolation and Characterization of Salmonella Jumbo-Phage pSal-SNUABM-04
por: Kwon, Jun, et al.
Publicado: (2020)

Characterization of a novel genus of jumbo phages and their application in wastewater treatment
por: Hu, Ming, et al.
Publicado: (2023)

Novel clades of the HU/IHF superfamily point to unexpected roles in the eukaryotic centrosome, chromosome partitioning, and biologic conflicts
por: Burroughs, A. Maxwell, et al.
Publicado: (2017)

A cytoskeletal vortex drives phage nucleus rotation during jumbo phage replication in E. coli
por: Birkholz, Erica A., et al.
Publicado: (2022)

Diversification of AID/APOBEC-like deaminases in metazoa: multiplicity of clades and widespread roles in immunity
por: Krishnan, Arunkumar, et al.
Publicado: (2018)

Transposons to toxins: the provenance, architecture and diversification of a widespread class of eukaryotic effectors
por: Zhang, Dapeng, et al.
Publicado: (2016)

Pseudomonas Phage PaBG—A Jumbo Member of an Old Parasite Family
por: Evseev, Peter, et al.
Publicado: (2020)

Subcellular organization of viral particles during maturation of nucleus-forming jumbo phage
por: Chaikeeratisak, Vorrapon, et al.
Publicado: (2022)

The Dynamics of Synthesis and Localization of Jumbo Phage RNA Polymerases inside Infected Cells
por: Antonova, Daria, et al.
Publicado: (2023)

The Phage Nucleus and PhuZ Spindle: Defining Features of the Subcellular Organization and Speciation of Nucleus-Forming Jumbo Phages
por: Chaikeeratisak, Vorrapon, et al.
Publicado: (2021)

Jumbo Run
Publicado: (1993)

A Novel Jumbo Phage PhiMa05 Inhibits Harmful Microcystis sp.
por: Naknaen, Ampapan, et al.
Publicado: (2021)

Interactions between Jumbo Phage SA1 and Staphylococcus: A Global Transcriptomic Analysis
por: Zhang, Bingyan, et al.
Publicado: (2022)

Proteomic Analysis of a Novel Bacillus Jumbo Phage Revealing Glycoside Hydrolase As Structural Component
por: Yuan, Yihui, et al.
Publicado: (2016)

Genome Sequence of Jumbo Phage vB_AbaM_ME3 of Acinetobacter baumanni
por: Buttimer, Colin, et al.
Publicado: (2016)

Characterization of two related Erwinia myoviruses that are distant relatives of the PhiKZ-like Jumbo phages
por: Arens, Daniel K., et al.
Publicado: (2018)

Therapeutic Potential of a New Jumbo Phage That Infects Vibrio coralliilyticus, a Widespread Coral Pathogen
por: Jacquemot, Loïc, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_v8oq07u6524jqnaae0rvpnvspd