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Application of Machine Learning for Tumor Growth Inhibition – Overall Survival Modeling Platform

Machine learning (ML) was used to leverage tumor growth inhibition (TGI) metrics to characterize the relationship with overall survival (OS) as a novel approach and to compare with traditional TGI‐OS modeling methods. Historical dataset from a phase III non‐small cell lung cancer study (OAK, atezoli...

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Autores principales: Chan, Phyllis, Zhou, Xiaofei, Wang, Nina, Liu, Qi, Bruno, René, Jin, Jin Y.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7825187/
https://www.ncbi.nlm.nih.gov/pubmed/33280255
http://dx.doi.org/10.1002/psp4.12576
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author Chan, Phyllis
Zhou, Xiaofei
Wang, Nina
Liu, Qi
Bruno, René
Jin, Jin Y.
author_facet Chan, Phyllis
Zhou, Xiaofei
Wang, Nina
Liu, Qi
Bruno, René
Jin, Jin Y.
author_sort Chan, Phyllis
collection PubMed
description Machine learning (ML) was used to leverage tumor growth inhibition (TGI) metrics to characterize the relationship with overall survival (OS) as a novel approach and to compare with traditional TGI‐OS modeling methods. Historical dataset from a phase III non‐small cell lung cancer study (OAK, atezolizumab vs. docetaxel, N = 668) was used. ML methods support the validity of TGI metrics in predicting OS. With lasso, the best model with TGI metrics outperforms the best model without TGI metrics. Boosting was the best linear ML method for this dataset with reduced estimation bias and lowest Brier score, suggesting better prediction accuracy. Random forest did not outperform linear ML methods despite hyperparameter optimization. Kernel machine was marginally the best nonlinear ML method for this dataset and uncovered nonlinear and interaction effects. Nonlinear ML may improve prediction by capturing nonlinear effects and covariate interactions, but its predictive performance and value need further evaluation with larger datasets.
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spelling pubmed-78251872021-02-01 Application of Machine Learning for Tumor Growth Inhibition – Overall Survival Modeling Platform Chan, Phyllis Zhou, Xiaofei Wang, Nina Liu, Qi Bruno, René Jin, Jin Y. CPT Pharmacometrics Syst Pharmacol Research Machine learning (ML) was used to leverage tumor growth inhibition (TGI) metrics to characterize the relationship with overall survival (OS) as a novel approach and to compare with traditional TGI‐OS modeling methods. Historical dataset from a phase III non‐small cell lung cancer study (OAK, atezolizumab vs. docetaxel, N = 668) was used. ML methods support the validity of TGI metrics in predicting OS. With lasso, the best model with TGI metrics outperforms the best model without TGI metrics. Boosting was the best linear ML method for this dataset with reduced estimation bias and lowest Brier score, suggesting better prediction accuracy. Random forest did not outperform linear ML methods despite hyperparameter optimization. Kernel machine was marginally the best nonlinear ML method for this dataset and uncovered nonlinear and interaction effects. Nonlinear ML may improve prediction by capturing nonlinear effects and covariate interactions, but its predictive performance and value need further evaluation with larger datasets. John Wiley and Sons Inc. 2020-12-13 2021-01 /pmc/articles/PMC7825187/ /pubmed/33280255 http://dx.doi.org/10.1002/psp4.12576 Text en © 2020 Genentech Inc. CPT: Pharmacometrics & Systems Pharmacology published by Wiley Periodicals LLC on behalf of the American Society for Clinical Pharmacology and Therapeutics. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research
Chan, Phyllis
Zhou, Xiaofei
Wang, Nina
Liu, Qi
Bruno, René
Jin, Jin Y.
Application of Machine Learning for Tumor Growth Inhibition – Overall Survival Modeling Platform
title Application of Machine Learning for Tumor Growth Inhibition – Overall Survival Modeling Platform
title_full Application of Machine Learning for Tumor Growth Inhibition – Overall Survival Modeling Platform
title_fullStr Application of Machine Learning for Tumor Growth Inhibition – Overall Survival Modeling Platform
title_full_unstemmed Application of Machine Learning for Tumor Growth Inhibition – Overall Survival Modeling Platform
title_short Application of Machine Learning for Tumor Growth Inhibition – Overall Survival Modeling Platform
title_sort application of machine learning for tumor growth inhibition – overall survival modeling platform
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7825187/
https://www.ncbi.nlm.nih.gov/pubmed/33280255
http://dx.doi.org/10.1002/psp4.12576
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