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Application of Machine Learning for Tumor Growth Inhibition – Overall Survival Modeling Platform
Machine learning (ML) was used to leverage tumor growth inhibition (TGI) metrics to characterize the relationship with overall survival (OS) as a novel approach and to compare with traditional TGI‐OS modeling methods. Historical dataset from a phase III non‐small cell lung cancer study (OAK, atezoli...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7825187/ https://www.ncbi.nlm.nih.gov/pubmed/33280255 http://dx.doi.org/10.1002/psp4.12576 |
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author | Chan, Phyllis Zhou, Xiaofei Wang, Nina Liu, Qi Bruno, René Jin, Jin Y. |
author_facet | Chan, Phyllis Zhou, Xiaofei Wang, Nina Liu, Qi Bruno, René Jin, Jin Y. |
author_sort | Chan, Phyllis |
collection | PubMed |
description | Machine learning (ML) was used to leverage tumor growth inhibition (TGI) metrics to characterize the relationship with overall survival (OS) as a novel approach and to compare with traditional TGI‐OS modeling methods. Historical dataset from a phase III non‐small cell lung cancer study (OAK, atezolizumab vs. docetaxel, N = 668) was used. ML methods support the validity of TGI metrics in predicting OS. With lasso, the best model with TGI metrics outperforms the best model without TGI metrics. Boosting was the best linear ML method for this dataset with reduced estimation bias and lowest Brier score, suggesting better prediction accuracy. Random forest did not outperform linear ML methods despite hyperparameter optimization. Kernel machine was marginally the best nonlinear ML method for this dataset and uncovered nonlinear and interaction effects. Nonlinear ML may improve prediction by capturing nonlinear effects and covariate interactions, but its predictive performance and value need further evaluation with larger datasets. |
format | Online Article Text |
id | pubmed-7825187 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-78251872021-02-01 Application of Machine Learning for Tumor Growth Inhibition – Overall Survival Modeling Platform Chan, Phyllis Zhou, Xiaofei Wang, Nina Liu, Qi Bruno, René Jin, Jin Y. CPT Pharmacometrics Syst Pharmacol Research Machine learning (ML) was used to leverage tumor growth inhibition (TGI) metrics to characterize the relationship with overall survival (OS) as a novel approach and to compare with traditional TGI‐OS modeling methods. Historical dataset from a phase III non‐small cell lung cancer study (OAK, atezolizumab vs. docetaxel, N = 668) was used. ML methods support the validity of TGI metrics in predicting OS. With lasso, the best model with TGI metrics outperforms the best model without TGI metrics. Boosting was the best linear ML method for this dataset with reduced estimation bias and lowest Brier score, suggesting better prediction accuracy. Random forest did not outperform linear ML methods despite hyperparameter optimization. Kernel machine was marginally the best nonlinear ML method for this dataset and uncovered nonlinear and interaction effects. Nonlinear ML may improve prediction by capturing nonlinear effects and covariate interactions, but its predictive performance and value need further evaluation with larger datasets. John Wiley and Sons Inc. 2020-12-13 2021-01 /pmc/articles/PMC7825187/ /pubmed/33280255 http://dx.doi.org/10.1002/psp4.12576 Text en © 2020 Genentech Inc. CPT: Pharmacometrics & Systems Pharmacology published by Wiley Periodicals LLC on behalf of the American Society for Clinical Pharmacology and Therapeutics. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Chan, Phyllis Zhou, Xiaofei Wang, Nina Liu, Qi Bruno, René Jin, Jin Y. Application of Machine Learning for Tumor Growth Inhibition – Overall Survival Modeling Platform |
title | Application of Machine Learning for Tumor Growth Inhibition – Overall Survival Modeling Platform |
title_full | Application of Machine Learning for Tumor Growth Inhibition – Overall Survival Modeling Platform |
title_fullStr | Application of Machine Learning for Tumor Growth Inhibition – Overall Survival Modeling Platform |
title_full_unstemmed | Application of Machine Learning for Tumor Growth Inhibition – Overall Survival Modeling Platform |
title_short | Application of Machine Learning for Tumor Growth Inhibition – Overall Survival Modeling Platform |
title_sort | application of machine learning for tumor growth inhibition – overall survival modeling platform |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7825187/ https://www.ncbi.nlm.nih.gov/pubmed/33280255 http://dx.doi.org/10.1002/psp4.12576 |
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