Cargando…
In-silico network-based analysis of drugs used against COVID-19: Human well-being study
INTRODUCTION: Researchers worldwide with great endeavor searching and repurpose drugs might be potentially useful in fighting newly emerged coronavirus. These drugs show inhibition but also show side effects and complications too. On December 27, 2020, 80,926,235 cases have been reported worldwide....
Autores principales: | , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7825994/ https://www.ncbi.nlm.nih.gov/pubmed/33519272 http://dx.doi.org/10.1016/j.sjbs.2021.01.006 |
_version_ | 1783640436509769728 |
---|---|
author | Attique, Zarlish Ali, Ashaq Hamza, Muhammad al-Ghanim, Khalid A. Mehmood, Azhar Khan, Sajid Ahmed, Zubair Al-Mulhm, Norah Rizwan, Muhammad Munir, Anum Al-Suliman, Emin Farooq, Muhammad F., Al-Misned Mahboob, Shahid |
author_facet | Attique, Zarlish Ali, Ashaq Hamza, Muhammad al-Ghanim, Khalid A. Mehmood, Azhar Khan, Sajid Ahmed, Zubair Al-Mulhm, Norah Rizwan, Muhammad Munir, Anum Al-Suliman, Emin Farooq, Muhammad F., Al-Misned Mahboob, Shahid |
author_sort | Attique, Zarlish |
collection | PubMed |
description | INTRODUCTION: Researchers worldwide with great endeavor searching and repurpose drugs might be potentially useful in fighting newly emerged coronavirus. These drugs show inhibition but also show side effects and complications too. On December 27, 2020, 80,926,235 cases have been reported worldwide. Specifically, in Pakistan, 471,335 has been reported with inconsiderable deaths. PROBLEM STATEMENT: Identification of COVID-19 drugs pathway through drug-gene and gene−gene interaction to find out the most important genes involved in the pathway to deal with the actual cause of side effects beyond the beneficent effects of the drugs. METHODOLOGY: The medicines used to treat COVID-19 are retrieved from the Drug Bank. The drug-gene interaction was performed using the Drug Gene Interaction Database to check the relation between the genes and the drugs. The networks of genes are developed by Gene MANIA, while Cytoscape is used to check the active functional association of the targeted gene. The developed systems cross-validated using the EnrichNet tool and identify drug genes' concerned pathways using Reactome and STRING. RESULTS: Five drugs Azithromycin, Bevacizumab, CQ, HCQ, and Lopinavir, are retrieved. The drug-gene interaction shows several genes that are targeted by the drug. Gene MANIA interaction network shows the functional association of the genes like co-expression, physical interaction, predicted, genetic interaction, co-localization, and shared protein domains. CONCLUSION: Our study suggests the pathways for each drug in which targeted genes and medicines play a crucial role, which will help experts in-vitro overcome and deal with the side effects of these drugs, as we find out the in-silico gene analysis for the COVID-19 drugs. |
format | Online Article Text |
id | pubmed-7825994 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-78259942021-01-25 In-silico network-based analysis of drugs used against COVID-19: Human well-being study Attique, Zarlish Ali, Ashaq Hamza, Muhammad al-Ghanim, Khalid A. Mehmood, Azhar Khan, Sajid Ahmed, Zubair Al-Mulhm, Norah Rizwan, Muhammad Munir, Anum Al-Suliman, Emin Farooq, Muhammad F., Al-Misned Mahboob, Shahid Saudi J Biol Sci Original Article INTRODUCTION: Researchers worldwide with great endeavor searching and repurpose drugs might be potentially useful in fighting newly emerged coronavirus. These drugs show inhibition but also show side effects and complications too. On December 27, 2020, 80,926,235 cases have been reported worldwide. Specifically, in Pakistan, 471,335 has been reported with inconsiderable deaths. PROBLEM STATEMENT: Identification of COVID-19 drugs pathway through drug-gene and gene−gene interaction to find out the most important genes involved in the pathway to deal with the actual cause of side effects beyond the beneficent effects of the drugs. METHODOLOGY: The medicines used to treat COVID-19 are retrieved from the Drug Bank. The drug-gene interaction was performed using the Drug Gene Interaction Database to check the relation between the genes and the drugs. The networks of genes are developed by Gene MANIA, while Cytoscape is used to check the active functional association of the targeted gene. The developed systems cross-validated using the EnrichNet tool and identify drug genes' concerned pathways using Reactome and STRING. RESULTS: Five drugs Azithromycin, Bevacizumab, CQ, HCQ, and Lopinavir, are retrieved. The drug-gene interaction shows several genes that are targeted by the drug. Gene MANIA interaction network shows the functional association of the genes like co-expression, physical interaction, predicted, genetic interaction, co-localization, and shared protein domains. CONCLUSION: Our study suggests the pathways for each drug in which targeted genes and medicines play a crucial role, which will help experts in-vitro overcome and deal with the side effects of these drugs, as we find out the in-silico gene analysis for the COVID-19 drugs. Elsevier 2021-03 2021-01-21 /pmc/articles/PMC7825994/ /pubmed/33519272 http://dx.doi.org/10.1016/j.sjbs.2021.01.006 Text en © 2021 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Original Article Attique, Zarlish Ali, Ashaq Hamza, Muhammad al-Ghanim, Khalid A. Mehmood, Azhar Khan, Sajid Ahmed, Zubair Al-Mulhm, Norah Rizwan, Muhammad Munir, Anum Al-Suliman, Emin Farooq, Muhammad F., Al-Misned Mahboob, Shahid In-silico network-based analysis of drugs used against COVID-19: Human well-being study |
title | In-silico network-based analysis of drugs used against COVID-19: Human well-being study |
title_full | In-silico network-based analysis of drugs used against COVID-19: Human well-being study |
title_fullStr | In-silico network-based analysis of drugs used against COVID-19: Human well-being study |
title_full_unstemmed | In-silico network-based analysis of drugs used against COVID-19: Human well-being study |
title_short | In-silico network-based analysis of drugs used against COVID-19: Human well-being study |
title_sort | in-silico network-based analysis of drugs used against covid-19: human well-being study |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7825994/ https://www.ncbi.nlm.nih.gov/pubmed/33519272 http://dx.doi.org/10.1016/j.sjbs.2021.01.006 |
work_keys_str_mv | AT attiquezarlish insiliconetworkbasedanalysisofdrugsusedagainstcovid19humanwellbeingstudy AT aliashaq insiliconetworkbasedanalysisofdrugsusedagainstcovid19humanwellbeingstudy AT hamzamuhammad insiliconetworkbasedanalysisofdrugsusedagainstcovid19humanwellbeingstudy AT alghanimkhalida insiliconetworkbasedanalysisofdrugsusedagainstcovid19humanwellbeingstudy AT mehmoodazhar insiliconetworkbasedanalysisofdrugsusedagainstcovid19humanwellbeingstudy AT khansajid insiliconetworkbasedanalysisofdrugsusedagainstcovid19humanwellbeingstudy AT ahmedzubair insiliconetworkbasedanalysisofdrugsusedagainstcovid19humanwellbeingstudy AT almulhmnorah insiliconetworkbasedanalysisofdrugsusedagainstcovid19humanwellbeingstudy AT rizwanmuhammad insiliconetworkbasedanalysisofdrugsusedagainstcovid19humanwellbeingstudy AT muniranum insiliconetworkbasedanalysisofdrugsusedagainstcovid19humanwellbeingstudy AT alsulimanemin insiliconetworkbasedanalysisofdrugsusedagainstcovid19humanwellbeingstudy AT farooqmuhammad insiliconetworkbasedanalysisofdrugsusedagainstcovid19humanwellbeingstudy AT falmisned insiliconetworkbasedanalysisofdrugsusedagainstcovid19humanwellbeingstudy AT mahboobshahid insiliconetworkbasedanalysisofdrugsusedagainstcovid19humanwellbeingstudy |