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Protein-Protein Interaction Analysis through Network Topology (Oral Cancer)

Oral cancer is a complex disorder. Its creation and spreading are due to the interaction of several proteins and genes in different biological thoroughfares. To study biological pathways, many high-yield methods have been used. Efforts to merge several data found at separate levels related to biolog...

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Autores principales: Wahab Khattak, Fazal, Salamah Alhwaiti, Yousef, Ali, Amjad, Faisal, Mohammad, Siddiqi, Muhammad Hameed
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7826244/
https://www.ncbi.nlm.nih.gov/pubmed/33510888
http://dx.doi.org/10.1155/2021/6623904
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author Wahab Khattak, Fazal
Salamah Alhwaiti, Yousef
Ali, Amjad
Faisal, Mohammad
Siddiqi, Muhammad Hameed
author_facet Wahab Khattak, Fazal
Salamah Alhwaiti, Yousef
Ali, Amjad
Faisal, Mohammad
Siddiqi, Muhammad Hameed
author_sort Wahab Khattak, Fazal
collection PubMed
description Oral cancer is a complex disorder. Its creation and spreading are due to the interaction of several proteins and genes in different biological thoroughfares. To study biological pathways, many high-yield methods have been used. Efforts to merge several data found at separate levels related to biological thoroughfares and interlinkage networks remain elusive. In our research work, we have proposed a technique known as protein-protein interaction network for analysis and exploring the genes involved in oral cancer disorders. The previous studies have not fully analyzed the proteins or genes involved in oral cancer. Our proposed technique is fully interactive and analyzes the data of oral cancer disorder more accurately and efficiently. The methods used here enabled us to observe the wide network consists of one mighty network comprising of 208 nodes 1572 edges which connect these nodes and various detached small networks. In our study, TP53 is a gene that occupied an important position in the network. TP53 has a 113-degree value and 0.03881821 BC value, indicating that TP53 is centrally localized in the network and is a significant bottleneck protein in the oral cancer protein-protein interaction network. These findings suggested that the pathogenesis of oral cancer variation was organized by means of an integrated PPI network, which is centered on TP53. Furthermore, our identification shows that TP53 is the key role-playing protein in the oral cancer network, and its significance in the cellular networks in the body is determined as well. As TP53 (tumor protein 53) is a vital player in the cell division process, the cells may not grow or divide disorderly; it fulfills the function of at least one of the gene groups in oral cancer. However, the latter progression in the area is any measure; the intention of developing these networks is to transfigure sketch of core disease development, prognosis, and treatment.
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spelling pubmed-78262442021-01-27 Protein-Protein Interaction Analysis through Network Topology (Oral Cancer) Wahab Khattak, Fazal Salamah Alhwaiti, Yousef Ali, Amjad Faisal, Mohammad Siddiqi, Muhammad Hameed J Healthc Eng Research Article Oral cancer is a complex disorder. Its creation and spreading are due to the interaction of several proteins and genes in different biological thoroughfares. To study biological pathways, many high-yield methods have been used. Efforts to merge several data found at separate levels related to biological thoroughfares and interlinkage networks remain elusive. In our research work, we have proposed a technique known as protein-protein interaction network for analysis and exploring the genes involved in oral cancer disorders. The previous studies have not fully analyzed the proteins or genes involved in oral cancer. Our proposed technique is fully interactive and analyzes the data of oral cancer disorder more accurately and efficiently. The methods used here enabled us to observe the wide network consists of one mighty network comprising of 208 nodes 1572 edges which connect these nodes and various detached small networks. In our study, TP53 is a gene that occupied an important position in the network. TP53 has a 113-degree value and 0.03881821 BC value, indicating that TP53 is centrally localized in the network and is a significant bottleneck protein in the oral cancer protein-protein interaction network. These findings suggested that the pathogenesis of oral cancer variation was organized by means of an integrated PPI network, which is centered on TP53. Furthermore, our identification shows that TP53 is the key role-playing protein in the oral cancer network, and its significance in the cellular networks in the body is determined as well. As TP53 (tumor protein 53) is a vital player in the cell division process, the cells may not grow or divide disorderly; it fulfills the function of at least one of the gene groups in oral cancer. However, the latter progression in the area is any measure; the intention of developing these networks is to transfigure sketch of core disease development, prognosis, and treatment. Hindawi 2021-01-16 /pmc/articles/PMC7826244/ /pubmed/33510888 http://dx.doi.org/10.1155/2021/6623904 Text en Copyright © 2021 Fazal Wahab Khattak et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Wahab Khattak, Fazal
Salamah Alhwaiti, Yousef
Ali, Amjad
Faisal, Mohammad
Siddiqi, Muhammad Hameed
Protein-Protein Interaction Analysis through Network Topology (Oral Cancer)
title Protein-Protein Interaction Analysis through Network Topology (Oral Cancer)
title_full Protein-Protein Interaction Analysis through Network Topology (Oral Cancer)
title_fullStr Protein-Protein Interaction Analysis through Network Topology (Oral Cancer)
title_full_unstemmed Protein-Protein Interaction Analysis through Network Topology (Oral Cancer)
title_short Protein-Protein Interaction Analysis through Network Topology (Oral Cancer)
title_sort protein-protein interaction analysis through network topology (oral cancer)
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7826244/
https://www.ncbi.nlm.nih.gov/pubmed/33510888
http://dx.doi.org/10.1155/2021/6623904
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