Cargando…

Automatic Lung Segmentation on Chest X-rays Using Self-Attention Deep Neural Network

Accurate identification of the boundaries of organs or abnormal objects (e.g., tumors) in medical images is important in surgical planning and in the diagnosis and prognosis of diseases. In this study, we propose a deep learning-based method to segment lung areas in chest X-rays. The novel aspect of...

Descripción completa

Detalles Bibliográficos
Autores principales: Kim, Minki, Lee, Byoung-Dai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7826788/
https://www.ncbi.nlm.nih.gov/pubmed/33430480
http://dx.doi.org/10.3390/s21020369
_version_ 1783640604226355200
author Kim, Minki
Lee, Byoung-Dai
author_facet Kim, Minki
Lee, Byoung-Dai
author_sort Kim, Minki
collection PubMed
description Accurate identification of the boundaries of organs or abnormal objects (e.g., tumors) in medical images is important in surgical planning and in the diagnosis and prognosis of diseases. In this study, we propose a deep learning-based method to segment lung areas in chest X-rays. The novel aspect of the proposed method is the self-attention module, where the outputs of the channel and spatial attention modules are combined to generate attention maps, with each highlighting those regions of feature maps that correspond to “what” and “where” to attend in the learning process, respectively. Thereafter, the attention maps are multiplied element-wise with the input feature map, and the intermediate results are added to the input feature map again for residual learning. Using X-ray images collected from public datasets for training and evaluation, we applied the proposed attention modules to U-Net for segmentation of lung areas and conducted experiments while changing the locations of the attention modules in the baseline network. The experimental results showed that our method achieved comparable or better performance than the existing medical image segmentation networks in terms of Dice score when the proposed attention modules were placed in lower layers of both the contracting and expanding paths of U-Net.
format Online
Article
Text
id pubmed-7826788
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-78267882021-01-25 Automatic Lung Segmentation on Chest X-rays Using Self-Attention Deep Neural Network Kim, Minki Lee, Byoung-Dai Sensors (Basel) Article Accurate identification of the boundaries of organs or abnormal objects (e.g., tumors) in medical images is important in surgical planning and in the diagnosis and prognosis of diseases. In this study, we propose a deep learning-based method to segment lung areas in chest X-rays. The novel aspect of the proposed method is the self-attention module, where the outputs of the channel and spatial attention modules are combined to generate attention maps, with each highlighting those regions of feature maps that correspond to “what” and “where” to attend in the learning process, respectively. Thereafter, the attention maps are multiplied element-wise with the input feature map, and the intermediate results are added to the input feature map again for residual learning. Using X-ray images collected from public datasets for training and evaluation, we applied the proposed attention modules to U-Net for segmentation of lung areas and conducted experiments while changing the locations of the attention modules in the baseline network. The experimental results showed that our method achieved comparable or better performance than the existing medical image segmentation networks in terms of Dice score when the proposed attention modules were placed in lower layers of both the contracting and expanding paths of U-Net. MDPI 2021-01-07 /pmc/articles/PMC7826788/ /pubmed/33430480 http://dx.doi.org/10.3390/s21020369 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kim, Minki
Lee, Byoung-Dai
Automatic Lung Segmentation on Chest X-rays Using Self-Attention Deep Neural Network
title Automatic Lung Segmentation on Chest X-rays Using Self-Attention Deep Neural Network
title_full Automatic Lung Segmentation on Chest X-rays Using Self-Attention Deep Neural Network
title_fullStr Automatic Lung Segmentation on Chest X-rays Using Self-Attention Deep Neural Network
title_full_unstemmed Automatic Lung Segmentation on Chest X-rays Using Self-Attention Deep Neural Network
title_short Automatic Lung Segmentation on Chest X-rays Using Self-Attention Deep Neural Network
title_sort automatic lung segmentation on chest x-rays using self-attention deep neural network
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7826788/
https://www.ncbi.nlm.nih.gov/pubmed/33430480
http://dx.doi.org/10.3390/s21020369
work_keys_str_mv AT kimminki automaticlungsegmentationonchestxraysusingselfattentiondeepneuralnetwork
AT leebyoungdai automaticlungsegmentationonchestxraysusingselfattentiondeepneuralnetwork