Cargando…

The Remarkable Metabolism of Vickermania ingenoplastis: Genomic Predictions

A recently redescribed two-flagellar trypanosomatid Vickermania ingenoplastis is insensitive to the classical inhibitors of respiration and thrives under anaerobic conditions. Using genomic and transcriptomic data, we analyzed its genes of the core metabolism and documented that subunits of the mito...

Descripción completa

Detalles Bibliográficos
Autores principales: Opperdoes, Fred R., Butenko, Anzhelika, Zakharova, Alexandra, Gerasimov, Evgeny S., Zimmer, Sara L., Lukeš, Julius, Yurchenko, Vyacheslav
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7828693/
https://www.ncbi.nlm.nih.gov/pubmed/33466586
http://dx.doi.org/10.3390/pathogens10010068
_version_ 1783641068082823168
author Opperdoes, Fred R.
Butenko, Anzhelika
Zakharova, Alexandra
Gerasimov, Evgeny S.
Zimmer, Sara L.
Lukeš, Julius
Yurchenko, Vyacheslav
author_facet Opperdoes, Fred R.
Butenko, Anzhelika
Zakharova, Alexandra
Gerasimov, Evgeny S.
Zimmer, Sara L.
Lukeš, Julius
Yurchenko, Vyacheslav
author_sort Opperdoes, Fred R.
collection PubMed
description A recently redescribed two-flagellar trypanosomatid Vickermania ingenoplastis is insensitive to the classical inhibitors of respiration and thrives under anaerobic conditions. Using genomic and transcriptomic data, we analyzed its genes of the core metabolism and documented that subunits of the mitochondrial respiratory complexes III and IV are ablated, while those of complexes I, II, and V are all present, along with an alternative oxidase. This explains the previously reported conversion of glucose to acetate and succinate by aerobic fermentation. Glycolytic pyruvate is metabolized to acetate and ethanol by pyruvate dismutation, whereby a unique type of alcohol dehydrogenase (shared only with Phytomonas spp.) processes an excess of reducing equivalents formed under anaerobic conditions, leading to the formation of ethanol. Succinate (formed to maintain the glycosomal redox balance) is converted to propionate by a cyclic process involving three enzymes of the mitochondrial methyl-malonyl-CoA pathway, via a cyclic process, which results in the formation of additional ATP. The unusual structure of the V. ingenoplastis genome and its similarity with that of Phytomonas spp. imply their relatedness or convergent evolution. Nevertheless, a critical difference between these two trypanosomatids is that the former has significantly increased its genome size by gene duplications, while the latter streamlined its genome.
format Online
Article
Text
id pubmed-7828693
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-78286932021-01-25 The Remarkable Metabolism of Vickermania ingenoplastis: Genomic Predictions Opperdoes, Fred R. Butenko, Anzhelika Zakharova, Alexandra Gerasimov, Evgeny S. Zimmer, Sara L. Lukeš, Julius Yurchenko, Vyacheslav Pathogens Article A recently redescribed two-flagellar trypanosomatid Vickermania ingenoplastis is insensitive to the classical inhibitors of respiration and thrives under anaerobic conditions. Using genomic and transcriptomic data, we analyzed its genes of the core metabolism and documented that subunits of the mitochondrial respiratory complexes III and IV are ablated, while those of complexes I, II, and V are all present, along with an alternative oxidase. This explains the previously reported conversion of glucose to acetate and succinate by aerobic fermentation. Glycolytic pyruvate is metabolized to acetate and ethanol by pyruvate dismutation, whereby a unique type of alcohol dehydrogenase (shared only with Phytomonas spp.) processes an excess of reducing equivalents formed under anaerobic conditions, leading to the formation of ethanol. Succinate (formed to maintain the glycosomal redox balance) is converted to propionate by a cyclic process involving three enzymes of the mitochondrial methyl-malonyl-CoA pathway, via a cyclic process, which results in the formation of additional ATP. The unusual structure of the V. ingenoplastis genome and its similarity with that of Phytomonas spp. imply their relatedness or convergent evolution. Nevertheless, a critical difference between these two trypanosomatids is that the former has significantly increased its genome size by gene duplications, while the latter streamlined its genome. MDPI 2021-01-14 /pmc/articles/PMC7828693/ /pubmed/33466586 http://dx.doi.org/10.3390/pathogens10010068 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Opperdoes, Fred R.
Butenko, Anzhelika
Zakharova, Alexandra
Gerasimov, Evgeny S.
Zimmer, Sara L.
Lukeš, Julius
Yurchenko, Vyacheslav
The Remarkable Metabolism of Vickermania ingenoplastis: Genomic Predictions
title The Remarkable Metabolism of Vickermania ingenoplastis: Genomic Predictions
title_full The Remarkable Metabolism of Vickermania ingenoplastis: Genomic Predictions
title_fullStr The Remarkable Metabolism of Vickermania ingenoplastis: Genomic Predictions
title_full_unstemmed The Remarkable Metabolism of Vickermania ingenoplastis: Genomic Predictions
title_short The Remarkable Metabolism of Vickermania ingenoplastis: Genomic Predictions
title_sort remarkable metabolism of vickermania ingenoplastis: genomic predictions
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7828693/
https://www.ncbi.nlm.nih.gov/pubmed/33466586
http://dx.doi.org/10.3390/pathogens10010068
work_keys_str_mv AT opperdoesfredr theremarkablemetabolismofvickermaniaingenoplastisgenomicpredictions
AT butenkoanzhelika theremarkablemetabolismofvickermaniaingenoplastisgenomicpredictions
AT zakharovaalexandra theremarkablemetabolismofvickermaniaingenoplastisgenomicpredictions
AT gerasimovevgenys theremarkablemetabolismofvickermaniaingenoplastisgenomicpredictions
AT zimmersaral theremarkablemetabolismofvickermaniaingenoplastisgenomicpredictions
AT lukesjulius theremarkablemetabolismofvickermaniaingenoplastisgenomicpredictions
AT yurchenkovyacheslav theremarkablemetabolismofvickermaniaingenoplastisgenomicpredictions
AT opperdoesfredr remarkablemetabolismofvickermaniaingenoplastisgenomicpredictions
AT butenkoanzhelika remarkablemetabolismofvickermaniaingenoplastisgenomicpredictions
AT zakharovaalexandra remarkablemetabolismofvickermaniaingenoplastisgenomicpredictions
AT gerasimovevgenys remarkablemetabolismofvickermaniaingenoplastisgenomicpredictions
AT zimmersaral remarkablemetabolismofvickermaniaingenoplastisgenomicpredictions
AT lukesjulius remarkablemetabolismofvickermaniaingenoplastisgenomicpredictions
AT yurchenkovyacheslav remarkablemetabolismofvickermaniaingenoplastisgenomicpredictions