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Improved autosomal STR typing of degraded femur samples extracted using a custom demineralization buffer and DNA IQ™
Bone samples are utilized as a source of DNA in disaster victim identification and human remains investigations. However, DNA recovery from bones is time consuming and prone to contamination. A logical approach for postmortem identification is to validate efficient DNA extraction methods requiring l...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7829153/ https://www.ncbi.nlm.nih.gov/pubmed/33532721 http://dx.doi.org/10.1016/j.fsisyn.2020.100131 |
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author | Calacal, Gayvelline C. Gallardo, Bea G. Apaga, Dame Loveliness T. De Ungria, Maria Corazon A. |
author_facet | Calacal, Gayvelline C. Gallardo, Bea G. Apaga, Dame Loveliness T. De Ungria, Maria Corazon A. |
author_sort | Calacal, Gayvelline C. |
collection | PubMed |
description | Bone samples are utilized as a source of DNA in disaster victim identification and human remains investigations. However, DNA recovery from bones is time consuming and prone to contamination. A logical approach for postmortem identification is to validate efficient DNA extraction methods requiring less bone material using improved molecular kits with less hands-on time and workflows that facilitate faster turn-around time for processing. In this study, we evaluated DNA yield and amplification efficiency of DNA extracts using a new custom bone demineralization buffer (DMB; Promega) and extracted via manual and automated DNA IQ™ workflows. Including the demineralization step, the bone protocol can be completed in ∼4 h and even less with minimal sample handling when automated. Overall, a rapid and simple DNA extraction with improved allele recovery was validated using degraded bone samples exposed to tropical environments and post-disaster recovery as well as adverse conditions of embalming prior to internment. |
format | Online Article Text |
id | pubmed-7829153 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-78291532021-02-01 Improved autosomal STR typing of degraded femur samples extracted using a custom demineralization buffer and DNA IQ™ Calacal, Gayvelline C. Gallardo, Bea G. Apaga, Dame Loveliness T. De Ungria, Maria Corazon A. Forensic Sci Int Synerg Interdisciplinary Forensics Bone samples are utilized as a source of DNA in disaster victim identification and human remains investigations. However, DNA recovery from bones is time consuming and prone to contamination. A logical approach for postmortem identification is to validate efficient DNA extraction methods requiring less bone material using improved molecular kits with less hands-on time and workflows that facilitate faster turn-around time for processing. In this study, we evaluated DNA yield and amplification efficiency of DNA extracts using a new custom bone demineralization buffer (DMB; Promega) and extracted via manual and automated DNA IQ™ workflows. Including the demineralization step, the bone protocol can be completed in ∼4 h and even less with minimal sample handling when automated. Overall, a rapid and simple DNA extraction with improved allele recovery was validated using degraded bone samples exposed to tropical environments and post-disaster recovery as well as adverse conditions of embalming prior to internment. Elsevier 2021-01-08 /pmc/articles/PMC7829153/ /pubmed/33532721 http://dx.doi.org/10.1016/j.fsisyn.2020.100131 Text en © 2021 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Interdisciplinary Forensics Calacal, Gayvelline C. Gallardo, Bea G. Apaga, Dame Loveliness T. De Ungria, Maria Corazon A. Improved autosomal STR typing of degraded femur samples extracted using a custom demineralization buffer and DNA IQ™ |
title | Improved autosomal STR typing of degraded femur samples extracted using a custom demineralization buffer and DNA IQ™ |
title_full | Improved autosomal STR typing of degraded femur samples extracted using a custom demineralization buffer and DNA IQ™ |
title_fullStr | Improved autosomal STR typing of degraded femur samples extracted using a custom demineralization buffer and DNA IQ™ |
title_full_unstemmed | Improved autosomal STR typing of degraded femur samples extracted using a custom demineralization buffer and DNA IQ™ |
title_short | Improved autosomal STR typing of degraded femur samples extracted using a custom demineralization buffer and DNA IQ™ |
title_sort | improved autosomal str typing of degraded femur samples extracted using a custom demineralization buffer and dna iq™ |
topic | Interdisciplinary Forensics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7829153/ https://www.ncbi.nlm.nih.gov/pubmed/33532721 http://dx.doi.org/10.1016/j.fsisyn.2020.100131 |
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