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Improved autosomal STR typing of degraded femur samples extracted using a custom demineralization buffer and DNA IQ™

Bone samples are utilized as a source of DNA in disaster victim identification and human remains investigations. However, DNA recovery from bones is time consuming and prone to contamination. A logical approach for postmortem identification is to validate efficient DNA extraction methods requiring l...

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Autores principales: Calacal, Gayvelline C., Gallardo, Bea G., Apaga, Dame Loveliness T., De Ungria, Maria Corazon A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7829153/
https://www.ncbi.nlm.nih.gov/pubmed/33532721
http://dx.doi.org/10.1016/j.fsisyn.2020.100131
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author Calacal, Gayvelline C.
Gallardo, Bea G.
Apaga, Dame Loveliness T.
De Ungria, Maria Corazon A.
author_facet Calacal, Gayvelline C.
Gallardo, Bea G.
Apaga, Dame Loveliness T.
De Ungria, Maria Corazon A.
author_sort Calacal, Gayvelline C.
collection PubMed
description Bone samples are utilized as a source of DNA in disaster victim identification and human remains investigations. However, DNA recovery from bones is time consuming and prone to contamination. A logical approach for postmortem identification is to validate efficient DNA extraction methods requiring less bone material using improved molecular kits with less hands-on time and workflows that facilitate faster turn-around time for processing. In this study, we evaluated DNA yield and amplification efficiency of DNA extracts using a new custom bone demineralization buffer (DMB; Promega) and extracted via manual and automated DNA IQ™ workflows. Including the demineralization step, the bone protocol can be completed in ∼4 h and even less with minimal sample handling when automated. Overall, a rapid and simple DNA extraction with improved allele recovery was validated using degraded bone samples exposed to tropical environments and post-disaster recovery as well as adverse conditions of embalming prior to internment.
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spelling pubmed-78291532021-02-01 Improved autosomal STR typing of degraded femur samples extracted using a custom demineralization buffer and DNA IQ™ Calacal, Gayvelline C. Gallardo, Bea G. Apaga, Dame Loveliness T. De Ungria, Maria Corazon A. Forensic Sci Int Synerg Interdisciplinary Forensics Bone samples are utilized as a source of DNA in disaster victim identification and human remains investigations. However, DNA recovery from bones is time consuming and prone to contamination. A logical approach for postmortem identification is to validate efficient DNA extraction methods requiring less bone material using improved molecular kits with less hands-on time and workflows that facilitate faster turn-around time for processing. In this study, we evaluated DNA yield and amplification efficiency of DNA extracts using a new custom bone demineralization buffer (DMB; Promega) and extracted via manual and automated DNA IQ™ workflows. Including the demineralization step, the bone protocol can be completed in ∼4 h and even less with minimal sample handling when automated. Overall, a rapid and simple DNA extraction with improved allele recovery was validated using degraded bone samples exposed to tropical environments and post-disaster recovery as well as adverse conditions of embalming prior to internment. Elsevier 2021-01-08 /pmc/articles/PMC7829153/ /pubmed/33532721 http://dx.doi.org/10.1016/j.fsisyn.2020.100131 Text en © 2021 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Interdisciplinary Forensics
Calacal, Gayvelline C.
Gallardo, Bea G.
Apaga, Dame Loveliness T.
De Ungria, Maria Corazon A.
Improved autosomal STR typing of degraded femur samples extracted using a custom demineralization buffer and DNA IQ™
title Improved autosomal STR typing of degraded femur samples extracted using a custom demineralization buffer and DNA IQ™
title_full Improved autosomal STR typing of degraded femur samples extracted using a custom demineralization buffer and DNA IQ™
title_fullStr Improved autosomal STR typing of degraded femur samples extracted using a custom demineralization buffer and DNA IQ™
title_full_unstemmed Improved autosomal STR typing of degraded femur samples extracted using a custom demineralization buffer and DNA IQ™
title_short Improved autosomal STR typing of degraded femur samples extracted using a custom demineralization buffer and DNA IQ™
title_sort improved autosomal str typing of degraded femur samples extracted using a custom demineralization buffer and dna iq™
topic Interdisciplinary Forensics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7829153/
https://www.ncbi.nlm.nih.gov/pubmed/33532721
http://dx.doi.org/10.1016/j.fsisyn.2020.100131
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