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Visualizing the invisible: The effect of asymptomatic transmission on the outbreak dynamics of COVID-19

Understanding the outbreak dynamics of the COVID-19 pandemic has important implications for successful containment and mitigation strategies. Recent studies suggest that the population prevalence of SARS-CoV-2 antibodies, a proxy for the number of asymptomatic cases, could be an order of magnitude l...

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Autores principales: Peirlinck, Mathias, Linka, Kevin, Sahli Costabal, Francisco, Bhattacharya, Jay, Bendavid, Eran, Ioannidis, John P.A., Kuhl, Ellen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7831913/
https://www.ncbi.nlm.nih.gov/pubmed/33518823
http://dx.doi.org/10.1016/j.cma.2020.113410
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author Peirlinck, Mathias
Linka, Kevin
Sahli Costabal, Francisco
Bhattacharya, Jay
Bendavid, Eran
Ioannidis, John P.A.
Kuhl, Ellen
author_facet Peirlinck, Mathias
Linka, Kevin
Sahli Costabal, Francisco
Bhattacharya, Jay
Bendavid, Eran
Ioannidis, John P.A.
Kuhl, Ellen
author_sort Peirlinck, Mathias
collection PubMed
description Understanding the outbreak dynamics of the COVID-19 pandemic has important implications for successful containment and mitigation strategies. Recent studies suggest that the population prevalence of SARS-CoV-2 antibodies, a proxy for the number of asymptomatic cases, could be an order of magnitude larger than expected from the number of reported symptomatic cases. Knowing the precise prevalence and contagiousness of asymptomatic transmission is critical to estimate the overall dimension and pandemic potential of COVID-19. However, at this stage, the effect of the asymptomatic population, its size, and its outbreak dynamics remain largely unknown. Here we use reported symptomatic case data in conjunction with antibody seroprevalence studies, a mathematical epidemiology model, and a Bayesian framework to infer the epidemiological characteristics of COVID-19. Our model computes, in real time, the time-varying contact rate of the outbreak, and projects the temporal evolution and credible intervals of the effective reproduction number and the symptomatic, asymptomatic, and recovered populations. Our study quantifies the sensitivity of the outbreak dynamics of COVID-19 to three parameters: the effective reproduction number, the ratio between the symptomatic and asymptomatic populations, and the infectious periods of both groups. For nine distinct locations, our model estimates the fraction of the population that has been infected and recovered by Jun 15, 2020 to 24.15% (95% CI: 20.48%-28.14%) for Heinsberg (NRW, Germany), 2.40% (95% CI: 2.09%-2.76%) for Ada County (ID, USA), 46.19% (95% CI: 45.81%-46.60%) for New York City (NY, USA), 11.26% (95% CI: 7.21%-16.03%) for Santa Clara County (CA, USA), 3.09% (95% CI: 2.27%-4.03%) for Denmark, 12.35% (95% CI: 10.03%-15.18%) for Geneva Canton (Switzerland), 5.24% (95% CI: 4.84%-5.70%) for the Netherlands, 1.53% (95% CI: 0.76%-2.62%) for Rio Grande do Sul (Brazil), and 5.32% (95% CI: 4.77%-5.93%) for Belgium. Our method traces the initial outbreak date in Santa Clara County back to January 20, 2020 (95% CI: December 29, 2019–February 13, 2020). Our results could significantly change our understanding and management of the COVID-19 pandemic: A large asymptomatic population will make isolation, containment, and tracing of individual cases challenging. Instead, managing community transmission through increasing population awareness, promoting physical distancing, and encouraging behavioral changes could become more relevant.
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spelling pubmed-78319132021-01-26 Visualizing the invisible: The effect of asymptomatic transmission on the outbreak dynamics of COVID-19 Peirlinck, Mathias Linka, Kevin Sahli Costabal, Francisco Bhattacharya, Jay Bendavid, Eran Ioannidis, John P.A. Kuhl, Ellen Comput Methods Appl Mech Eng Article Understanding the outbreak dynamics of the COVID-19 pandemic has important implications for successful containment and mitigation strategies. Recent studies suggest that the population prevalence of SARS-CoV-2 antibodies, a proxy for the number of asymptomatic cases, could be an order of magnitude larger than expected from the number of reported symptomatic cases. Knowing the precise prevalence and contagiousness of asymptomatic transmission is critical to estimate the overall dimension and pandemic potential of COVID-19. However, at this stage, the effect of the asymptomatic population, its size, and its outbreak dynamics remain largely unknown. Here we use reported symptomatic case data in conjunction with antibody seroprevalence studies, a mathematical epidemiology model, and a Bayesian framework to infer the epidemiological characteristics of COVID-19. Our model computes, in real time, the time-varying contact rate of the outbreak, and projects the temporal evolution and credible intervals of the effective reproduction number and the symptomatic, asymptomatic, and recovered populations. Our study quantifies the sensitivity of the outbreak dynamics of COVID-19 to three parameters: the effective reproduction number, the ratio between the symptomatic and asymptomatic populations, and the infectious periods of both groups. For nine distinct locations, our model estimates the fraction of the population that has been infected and recovered by Jun 15, 2020 to 24.15% (95% CI: 20.48%-28.14%) for Heinsberg (NRW, Germany), 2.40% (95% CI: 2.09%-2.76%) for Ada County (ID, USA), 46.19% (95% CI: 45.81%-46.60%) for New York City (NY, USA), 11.26% (95% CI: 7.21%-16.03%) for Santa Clara County (CA, USA), 3.09% (95% CI: 2.27%-4.03%) for Denmark, 12.35% (95% CI: 10.03%-15.18%) for Geneva Canton (Switzerland), 5.24% (95% CI: 4.84%-5.70%) for the Netherlands, 1.53% (95% CI: 0.76%-2.62%) for Rio Grande do Sul (Brazil), and 5.32% (95% CI: 4.77%-5.93%) for Belgium. Our method traces the initial outbreak date in Santa Clara County back to January 20, 2020 (95% CI: December 29, 2019–February 13, 2020). Our results could significantly change our understanding and management of the COVID-19 pandemic: A large asymptomatic population will make isolation, containment, and tracing of individual cases challenging. Instead, managing community transmission through increasing population awareness, promoting physical distancing, and encouraging behavioral changes could become more relevant. Elsevier B.V. 2020-12-01 2020-09-08 /pmc/articles/PMC7831913/ /pubmed/33518823 http://dx.doi.org/10.1016/j.cma.2020.113410 Text en © 2020 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Peirlinck, Mathias
Linka, Kevin
Sahli Costabal, Francisco
Bhattacharya, Jay
Bendavid, Eran
Ioannidis, John P.A.
Kuhl, Ellen
Visualizing the invisible: The effect of asymptomatic transmission on the outbreak dynamics of COVID-19
title Visualizing the invisible: The effect of asymptomatic transmission on the outbreak dynamics of COVID-19
title_full Visualizing the invisible: The effect of asymptomatic transmission on the outbreak dynamics of COVID-19
title_fullStr Visualizing the invisible: The effect of asymptomatic transmission on the outbreak dynamics of COVID-19
title_full_unstemmed Visualizing the invisible: The effect of asymptomatic transmission on the outbreak dynamics of COVID-19
title_short Visualizing the invisible: The effect of asymptomatic transmission on the outbreak dynamics of COVID-19
title_sort visualizing the invisible: the effect of asymptomatic transmission on the outbreak dynamics of covid-19
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7831913/
https://www.ncbi.nlm.nih.gov/pubmed/33518823
http://dx.doi.org/10.1016/j.cma.2020.113410
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