The complete chloroplast genome sequence and phylogenetic analysis of Ilex ‘Beryl’, a hybrid of Ilex cornuta × Ilex latifolia (Aquifoliaceae)

Ilex ‘Beryl’ is an ornamental and ecological tree widespread in southeastern China. In this study, the complete chloroplast (cp) genome of Ilex ‘Beryl’ was assembled and characterized to investigate its phylogenetic relationship. The entire cp genome of ‘Beryl’ was a typical quadripartite structure...

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Autores principales: Zhang, Fan, Chen, Hong, Zhou, Yanwei, Li, Naiwei, Chong, Xinran, Li, Yunlong, Lu, Xiaoqing, Wang, Chuanyong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7832488/
https://www.ncbi.nlm.nih.gov/pubmed/33537450
http://dx.doi.org/10.1080/23802359.2020.1861569
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author Zhang, Fan
Chen, Hong
Zhou, Yanwei
Li, Naiwei
Chong, Xinran
Li, Yunlong
Lu, Xiaoqing
Wang, Chuanyong
author_facet Zhang, Fan
Chen, Hong
Zhou, Yanwei
Li, Naiwei
Chong, Xinran
Li, Yunlong
Lu, Xiaoqing
Wang, Chuanyong
author_sort Zhang, Fan
collection PubMed
description Ilex ‘Beryl’ is an ornamental and ecological tree widespread in southeastern China. In this study, the complete chloroplast (cp) genome of Ilex ‘Beryl’ was assembled and characterized to investigate its phylogenetic relationship. The entire cp genome of ‘Beryl’ was a typical quadripartite structure with 157,575 bp in length, including a large single-copy (LSC) region of 87,080 bp and a small single-copy (SSC) region of 18,427 bp, which were separated by a pair of inverted repeats (IRs) of 52,068 bp. There are 135 genes annotated, including 90 protein-coding genes, eight rRNA genes and 37 tRNA genes. Phylogenetic analysis based on whole cp genome sequences showed that ‘Beryl’ is closest to I. ‘Emily Bruner’ and I. ‘tall boy’.
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spelling pubmed-78324882021-02-02 The complete chloroplast genome sequence and phylogenetic analysis of Ilex ‘Beryl’, a hybrid of Ilex cornuta × Ilex latifolia (Aquifoliaceae) Zhang, Fan Chen, Hong Zhou, Yanwei Li, Naiwei Chong, Xinran Li, Yunlong Lu, Xiaoqing Wang, Chuanyong Mitochondrial DNA B Resour Mitogenome Announcement Ilex ‘Beryl’ is an ornamental and ecological tree widespread in southeastern China. In this study, the complete chloroplast (cp) genome of Ilex ‘Beryl’ was assembled and characterized to investigate its phylogenetic relationship. The entire cp genome of ‘Beryl’ was a typical quadripartite structure with 157,575 bp in length, including a large single-copy (LSC) region of 87,080 bp and a small single-copy (SSC) region of 18,427 bp, which were separated by a pair of inverted repeats (IRs) of 52,068 bp. There are 135 genes annotated, including 90 protein-coding genes, eight rRNA genes and 37 tRNA genes. Phylogenetic analysis based on whole cp genome sequences showed that ‘Beryl’ is closest to I. ‘Emily Bruner’ and I. ‘tall boy’. Taylor & Francis 2021-01-20 /pmc/articles/PMC7832488/ /pubmed/33537450 http://dx.doi.org/10.1080/23802359.2020.1861569 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhang, Fan
Chen, Hong
Zhou, Yanwei
Li, Naiwei
Chong, Xinran
Li, Yunlong
Lu, Xiaoqing
Wang, Chuanyong
The complete chloroplast genome sequence and phylogenetic analysis of Ilex ‘Beryl’, a hybrid of Ilex cornuta × Ilex latifolia (Aquifoliaceae)
title The complete chloroplast genome sequence and phylogenetic analysis of Ilex ‘Beryl’, a hybrid of Ilex cornuta × Ilex latifolia (Aquifoliaceae)
title_full The complete chloroplast genome sequence and phylogenetic analysis of Ilex ‘Beryl’, a hybrid of Ilex cornuta × Ilex latifolia (Aquifoliaceae)
title_fullStr The complete chloroplast genome sequence and phylogenetic analysis of Ilex ‘Beryl’, a hybrid of Ilex cornuta × Ilex latifolia (Aquifoliaceae)
title_full_unstemmed The complete chloroplast genome sequence and phylogenetic analysis of Ilex ‘Beryl’, a hybrid of Ilex cornuta × Ilex latifolia (Aquifoliaceae)
title_short The complete chloroplast genome sequence and phylogenetic analysis of Ilex ‘Beryl’, a hybrid of Ilex cornuta × Ilex latifolia (Aquifoliaceae)
title_sort complete chloroplast genome sequence and phylogenetic analysis of ilex ‘beryl’, a hybrid of ilex cornuta × ilex latifolia (aquifoliaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7832488/
https://www.ncbi.nlm.nih.gov/pubmed/33537450
http://dx.doi.org/10.1080/23802359.2020.1861569
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