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Characterization of the complete chloroplast genome of Carya hunanensis W. C. Cheng & R. H. Chang
Carya hunanensis W. C. Cheng & R. H. Chang is a tree of great economic importance in China. In this study, the complete chloroplast genome of C. hunanensis was determined and analyzed phylogenetically. The whole genome was determined to be 159,892 bp in length, presenting a typical quadripartite...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7832538/ https://www.ncbi.nlm.nih.gov/pubmed/33553631 http://dx.doi.org/10.1080/23802359.2020.1861560 |
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author | Zhai, Min Guo, Zhong-Ren Jia, Xiao-Dong |
author_facet | Zhai, Min Guo, Zhong-Ren Jia, Xiao-Dong |
author_sort | Zhai, Min |
collection | PubMed |
description | Carya hunanensis W. C. Cheng & R. H. Chang is a tree of great economic importance in China. In this study, the complete chloroplast genome of C. hunanensis was determined and analyzed phylogenetically. The whole genome was determined to be 159,892 bp in length, presenting a typical quadripartite structure with a large single copy (LSC) region (89,466 bp), a small single copy (SSC) region (18,714 bp), and a pair of inverted repeat (IR) regions (25,856 bp each). There were 132 genes annotated in the genome, including 84 protein-coding genes, 40 tRNA genes, and eight rRNA genes. The overall GC content of C. hunanensis chloroplast genome was 36.24%. Phylogenetic analysis indicated that C. hunanensis was closely related to C. kweichowensis and Annamocarya sinensis. |
format | Online Article Text |
id | pubmed-7832538 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78325382021-02-05 Characterization of the complete chloroplast genome of Carya hunanensis W. C. Cheng & R. H. Chang Zhai, Min Guo, Zhong-Ren Jia, Xiao-Dong Mitochondrial DNA B Resour Mitogenome Announcement Carya hunanensis W. C. Cheng & R. H. Chang is a tree of great economic importance in China. In this study, the complete chloroplast genome of C. hunanensis was determined and analyzed phylogenetically. The whole genome was determined to be 159,892 bp in length, presenting a typical quadripartite structure with a large single copy (LSC) region (89,466 bp), a small single copy (SSC) region (18,714 bp), and a pair of inverted repeat (IR) regions (25,856 bp each). There were 132 genes annotated in the genome, including 84 protein-coding genes, 40 tRNA genes, and eight rRNA genes. The overall GC content of C. hunanensis chloroplast genome was 36.24%. Phylogenetic analysis indicated that C. hunanensis was closely related to C. kweichowensis and Annamocarya sinensis. Taylor & Francis 2021-01-19 /pmc/articles/PMC7832538/ /pubmed/33553631 http://dx.doi.org/10.1080/23802359.2020.1861560 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zhai, Min Guo, Zhong-Ren Jia, Xiao-Dong Characterization of the complete chloroplast genome of Carya hunanensis W. C. Cheng & R. H. Chang |
title | Characterization of the complete chloroplast genome of Carya hunanensis W. C. Cheng & R. H. Chang |
title_full | Characterization of the complete chloroplast genome of Carya hunanensis W. C. Cheng & R. H. Chang |
title_fullStr | Characterization of the complete chloroplast genome of Carya hunanensis W. C. Cheng & R. H. Chang |
title_full_unstemmed | Characterization of the complete chloroplast genome of Carya hunanensis W. C. Cheng & R. H. Chang |
title_short | Characterization of the complete chloroplast genome of Carya hunanensis W. C. Cheng & R. H. Chang |
title_sort | characterization of the complete chloroplast genome of carya hunanensis w. c. cheng & r. h. chang |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7832538/ https://www.ncbi.nlm.nih.gov/pubmed/33553631 http://dx.doi.org/10.1080/23802359.2020.1861560 |
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