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Three complete plastome sequences from the families of Lamiaceae, Mazaceae, and Phrymaceae (Lamiales)

In this study, we report the first complete plastome sequence of Vitex rotundifolia (Lamiaceae) (MT937186). In addition, the plastome sequences of Phryma leptostachya subsp. asiatica (Phrymaceae) (153,324 bp; MT948145) and Mazus pumilus (Mazaceae) (152,847 bp; MT937187) are also included. The gene o...

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Autores principales: Jo, Sangjin, Kim, Hoe-Won, Kim, Young-Kee, Cheon, Se-Hwan, Joo, Min-Jung, Hong, Ja-Ram, Kwak, Myounghai, Kim, Ki-Joong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7832541/
https://www.ncbi.nlm.nih.gov/pubmed/33553632
http://dx.doi.org/10.1080/23802359.2020.1861563
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author Jo, Sangjin
Kim, Hoe-Won
Kim, Young-Kee
Cheon, Se-Hwan
Joo, Min-Jung
Hong, Ja-Ram
Kwak, Myounghai
Kim, Ki-Joong
author_facet Jo, Sangjin
Kim, Hoe-Won
Kim, Young-Kee
Cheon, Se-Hwan
Joo, Min-Jung
Hong, Ja-Ram
Kwak, Myounghai
Kim, Ki-Joong
author_sort Jo, Sangjin
collection PubMed
description In this study, we report the first complete plastome sequence of Vitex rotundifolia (Lamiaceae) (MT937186). In addition, the plastome sequences of Phryma leptostachya subsp. asiatica (Phrymaceae) (153,324 bp; MT948145) and Mazus pumilus (Mazaceae) (152,847 bp; MT937187) are also included. The gene orders and structures of the three plastomes are collinear with those of the typical plastome of angiosperm. The plastome size of V. rotundifolia is 154,370 bp in length and consists of a large single-copy region of 85,079 bp and a small single-copy region of 17,917 bp, which are separated by a pair of 25,687 bp-long inverted repeat regions. In addition, the plastome sizes of P. leptostachya subsp. asiatica and M. pumilus are 153,324 bp and 152,847 bp, respectively. The three plastomes contain 113 genes, including 79 protein-coding, 30 tRNA, and four rRNA genes. Sixteen genes contain one intron and two genes have two introns. A total of 41 simple sequence repeat loci was identified in the V. rotundifolia plastome. Phylogenetic analysis shows that Viticoideae is a sister group of the last of Lamiaceae except Nepetoideae. The Mazaceae are a sister group of Lamiaceae, while Phrymaceae form a sister group to the Paulowniaceae-Orobanchaceae clade.
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spelling pubmed-78325412021-02-05 Three complete plastome sequences from the families of Lamiaceae, Mazaceae, and Phrymaceae (Lamiales) Jo, Sangjin Kim, Hoe-Won Kim, Young-Kee Cheon, Se-Hwan Joo, Min-Jung Hong, Ja-Ram Kwak, Myounghai Kim, Ki-Joong Mitochondrial DNA B Resour Mitogenome Announcement In this study, we report the first complete plastome sequence of Vitex rotundifolia (Lamiaceae) (MT937186). In addition, the plastome sequences of Phryma leptostachya subsp. asiatica (Phrymaceae) (153,324 bp; MT948145) and Mazus pumilus (Mazaceae) (152,847 bp; MT937187) are also included. The gene orders and structures of the three plastomes are collinear with those of the typical plastome of angiosperm. The plastome size of V. rotundifolia is 154,370 bp in length and consists of a large single-copy region of 85,079 bp and a small single-copy region of 17,917 bp, which are separated by a pair of 25,687 bp-long inverted repeat regions. In addition, the plastome sizes of P. leptostachya subsp. asiatica and M. pumilus are 153,324 bp and 152,847 bp, respectively. The three plastomes contain 113 genes, including 79 protein-coding, 30 tRNA, and four rRNA genes. Sixteen genes contain one intron and two genes have two introns. A total of 41 simple sequence repeat loci was identified in the V. rotundifolia plastome. Phylogenetic analysis shows that Viticoideae is a sister group of the last of Lamiaceae except Nepetoideae. The Mazaceae are a sister group of Lamiaceae, while Phrymaceae form a sister group to the Paulowniaceae-Orobanchaceae clade. Taylor & Francis 2021-01-19 /pmc/articles/PMC7832541/ /pubmed/33553632 http://dx.doi.org/10.1080/23802359.2020.1861563 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Jo, Sangjin
Kim, Hoe-Won
Kim, Young-Kee
Cheon, Se-Hwan
Joo, Min-Jung
Hong, Ja-Ram
Kwak, Myounghai
Kim, Ki-Joong
Three complete plastome sequences from the families of Lamiaceae, Mazaceae, and Phrymaceae (Lamiales)
title Three complete plastome sequences from the families of Lamiaceae, Mazaceae, and Phrymaceae (Lamiales)
title_full Three complete plastome sequences from the families of Lamiaceae, Mazaceae, and Phrymaceae (Lamiales)
title_fullStr Three complete plastome sequences from the families of Lamiaceae, Mazaceae, and Phrymaceae (Lamiales)
title_full_unstemmed Three complete plastome sequences from the families of Lamiaceae, Mazaceae, and Phrymaceae (Lamiales)
title_short Three complete plastome sequences from the families of Lamiaceae, Mazaceae, and Phrymaceae (Lamiales)
title_sort three complete plastome sequences from the families of lamiaceae, mazaceae, and phrymaceae (lamiales)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7832541/
https://www.ncbi.nlm.nih.gov/pubmed/33553632
http://dx.doi.org/10.1080/23802359.2020.1861563
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