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Optimization of 3D Point Clouds of Oilseed Rape Plants Based on Time-of-Flight Cameras

Three-dimensional (3D) structure is an important morphological trait of plants for describing their growth and biotic/abiotic stress responses. Various methods have been developed for obtaining 3D plant data, but the data quality and equipment costs are the main factors limiting their development. H...

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Autores principales: Ma, Zhihong, Sun, Dawei, Xu, Haixia, Zhu, Yueming, He, Yong, Cen, Haiyan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7833437/
https://www.ncbi.nlm.nih.gov/pubmed/33477933
http://dx.doi.org/10.3390/s21020664
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author Ma, Zhihong
Sun, Dawei
Xu, Haixia
Zhu, Yueming
He, Yong
Cen, Haiyan
author_facet Ma, Zhihong
Sun, Dawei
Xu, Haixia
Zhu, Yueming
He, Yong
Cen, Haiyan
author_sort Ma, Zhihong
collection PubMed
description Three-dimensional (3D) structure is an important morphological trait of plants for describing their growth and biotic/abiotic stress responses. Various methods have been developed for obtaining 3D plant data, but the data quality and equipment costs are the main factors limiting their development. Here, we propose a method to improve the quality of 3D plant data using the time-of-flight (TOF) camera Kinect V2. A K-dimension (k-d) tree was applied to spatial topological relationships for searching points. Background noise points were then removed with a minimum oriented bounding box (MOBB) with a pass-through filter, while outliers and flying pixel points were removed based on viewpoints and surface normals. After being smoothed with the bilateral filter, the 3D plant data were registered and meshed. We adjusted the mesh patches to eliminate layered points. The results showed that the patches were closer. The average distance between the patches was 1.88 × 10(−3) m, and the average angle was 17.64°, which were 54.97% and 48.33% of those values before optimization. The proposed method performed better in reducing noise and the local layered-points phenomenon, and it could help to more accurately determine 3D structure parameters from point clouds and mesh models.
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spelling pubmed-78334372021-01-26 Optimization of 3D Point Clouds of Oilseed Rape Plants Based on Time-of-Flight Cameras Ma, Zhihong Sun, Dawei Xu, Haixia Zhu, Yueming He, Yong Cen, Haiyan Sensors (Basel) Article Three-dimensional (3D) structure is an important morphological trait of plants for describing their growth and biotic/abiotic stress responses. Various methods have been developed for obtaining 3D plant data, but the data quality and equipment costs are the main factors limiting their development. Here, we propose a method to improve the quality of 3D plant data using the time-of-flight (TOF) camera Kinect V2. A K-dimension (k-d) tree was applied to spatial topological relationships for searching points. Background noise points were then removed with a minimum oriented bounding box (MOBB) with a pass-through filter, while outliers and flying pixel points were removed based on viewpoints and surface normals. After being smoothed with the bilateral filter, the 3D plant data were registered and meshed. We adjusted the mesh patches to eliminate layered points. The results showed that the patches were closer. The average distance between the patches was 1.88 × 10(−3) m, and the average angle was 17.64°, which were 54.97% and 48.33% of those values before optimization. The proposed method performed better in reducing noise and the local layered-points phenomenon, and it could help to more accurately determine 3D structure parameters from point clouds and mesh models. MDPI 2021-01-19 /pmc/articles/PMC7833437/ /pubmed/33477933 http://dx.doi.org/10.3390/s21020664 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ma, Zhihong
Sun, Dawei
Xu, Haixia
Zhu, Yueming
He, Yong
Cen, Haiyan
Optimization of 3D Point Clouds of Oilseed Rape Plants Based on Time-of-Flight Cameras
title Optimization of 3D Point Clouds of Oilseed Rape Plants Based on Time-of-Flight Cameras
title_full Optimization of 3D Point Clouds of Oilseed Rape Plants Based on Time-of-Flight Cameras
title_fullStr Optimization of 3D Point Clouds of Oilseed Rape Plants Based on Time-of-Flight Cameras
title_full_unstemmed Optimization of 3D Point Clouds of Oilseed Rape Plants Based on Time-of-Flight Cameras
title_short Optimization of 3D Point Clouds of Oilseed Rape Plants Based on Time-of-Flight Cameras
title_sort optimization of 3d point clouds of oilseed rape plants based on time-of-flight cameras
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7833437/
https://www.ncbi.nlm.nih.gov/pubmed/33477933
http://dx.doi.org/10.3390/s21020664
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