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Momentum contrastive learning for few-shot COVID-19 diagnosis from chest CT images

The current pandemic, caused by the outbreak of a novel coronavirus (COVID-19) in December 2019, has led to a global emergency that has significantly impacted economies, healthcare systems and personal wellbeing all around the world. Controlling the rapidly evolving disease requires highly sensitive...

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Detalles Bibliográficos
Autores principales: Chen, Xiaocong, Yao, Lina, Zhou, Tao, Dong, Jinming, Zhang, Yu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7833525/
https://www.ncbi.nlm.nih.gov/pubmed/33518813
http://dx.doi.org/10.1016/j.patcog.2021.107826
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author Chen, Xiaocong
Yao, Lina
Zhou, Tao
Dong, Jinming
Zhang, Yu
author_facet Chen, Xiaocong
Yao, Lina
Zhou, Tao
Dong, Jinming
Zhang, Yu
author_sort Chen, Xiaocong
collection PubMed
description The current pandemic, caused by the outbreak of a novel coronavirus (COVID-19) in December 2019, has led to a global emergency that has significantly impacted economies, healthcare systems and personal wellbeing all around the world. Controlling the rapidly evolving disease requires highly sensitive and specific diagnostics. While RT-PCR is the most commonly used, it can take up to eight hours, and requires significant effort from healthcare professionals. As such, there is a critical need for a quick and automatic diagnostic system. Diagnosis from chest CT images is a promising direction. However, current studies are limited by the lack of sufficient training samples, as acquiring annotated CT images is time-consuming. To this end, we propose a new deep learning algorithm for the automated diagnosis of COVID-19, which only requires a few samples for training. Specifically, we use contrastive learning to train an encoder which can capture expressive feature representations on large and publicly available lung datasets and adopt the prototypical network for classification. We validate the efficacy of the proposed model in comparison with other competing methods on two publicly available and annotated COVID-19 CT datasets. Our results demonstrate the superior performance of our model for the accurate diagnosis of COVID-19 based on chest CT images.
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spelling pubmed-78335252021-01-26 Momentum contrastive learning for few-shot COVID-19 diagnosis from chest CT images Chen, Xiaocong Yao, Lina Zhou, Tao Dong, Jinming Zhang, Yu Pattern Recognit Article The current pandemic, caused by the outbreak of a novel coronavirus (COVID-19) in December 2019, has led to a global emergency that has significantly impacted economies, healthcare systems and personal wellbeing all around the world. Controlling the rapidly evolving disease requires highly sensitive and specific diagnostics. While RT-PCR is the most commonly used, it can take up to eight hours, and requires significant effort from healthcare professionals. As such, there is a critical need for a quick and automatic diagnostic system. Diagnosis from chest CT images is a promising direction. However, current studies are limited by the lack of sufficient training samples, as acquiring annotated CT images is time-consuming. To this end, we propose a new deep learning algorithm for the automated diagnosis of COVID-19, which only requires a few samples for training. Specifically, we use contrastive learning to train an encoder which can capture expressive feature representations on large and publicly available lung datasets and adopt the prototypical network for classification. We validate the efficacy of the proposed model in comparison with other competing methods on two publicly available and annotated COVID-19 CT datasets. Our results demonstrate the superior performance of our model for the accurate diagnosis of COVID-19 based on chest CT images. Elsevier Ltd. 2021-05 2021-01-16 /pmc/articles/PMC7833525/ /pubmed/33518813 http://dx.doi.org/10.1016/j.patcog.2021.107826 Text en © 2021 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Chen, Xiaocong
Yao, Lina
Zhou, Tao
Dong, Jinming
Zhang, Yu
Momentum contrastive learning for few-shot COVID-19 diagnosis from chest CT images
title Momentum contrastive learning for few-shot COVID-19 diagnosis from chest CT images
title_full Momentum contrastive learning for few-shot COVID-19 diagnosis from chest CT images
title_fullStr Momentum contrastive learning for few-shot COVID-19 diagnosis from chest CT images
title_full_unstemmed Momentum contrastive learning for few-shot COVID-19 diagnosis from chest CT images
title_short Momentum contrastive learning for few-shot COVID-19 diagnosis from chest CT images
title_sort momentum contrastive learning for few-shot covid-19 diagnosis from chest ct images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7833525/
https://www.ncbi.nlm.nih.gov/pubmed/33518813
http://dx.doi.org/10.1016/j.patcog.2021.107826
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