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A protein folding robot driven by a self-taught agent

This paper presents a computer simulation of a virtual robot that behaves as a peptide chain of the Hemagglutinin-Esterase protein (HEs) from human coronavirus. The robot can learn efficient protein folding policies by itself and then use them to solve HEs folding episodes. The proposed robotic unfo...

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Autores principales: Chang, Oscar, Gonzales-Zubiate, Fernando A., Zhinin-Vera, Luis, Valencia-Ramos, Rafael, Pineda, Israel, Diaz-Barrios, Antonio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7834057/
https://www.ncbi.nlm.nih.gov/pubmed/33358827
http://dx.doi.org/10.1016/j.biosystems.2020.104315
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author Chang, Oscar
Gonzales-Zubiate, Fernando A.
Zhinin-Vera, Luis
Valencia-Ramos, Rafael
Pineda, Israel
Diaz-Barrios, Antonio
author_facet Chang, Oscar
Gonzales-Zubiate, Fernando A.
Zhinin-Vera, Luis
Valencia-Ramos, Rafael
Pineda, Israel
Diaz-Barrios, Antonio
author_sort Chang, Oscar
collection PubMed
description This paper presents a computer simulation of a virtual robot that behaves as a peptide chain of the Hemagglutinin-Esterase protein (HEs) from human coronavirus. The robot can learn efficient protein folding policies by itself and then use them to solve HEs folding episodes. The proposed robotic unfolded structure inhabits a dynamic environment and is driven by a self-taught neural agent. The neural agent can read sensors and control the angles and interactions between individual amino acids. During the training phase, the agent uses reinforcement learning to explore new folding forms that conduce toward more significant rewards. The memory of the agent is implemented with neural networks. These neural networks are noise-balanced trained to satisfy the look for future conditions required by the Bellman equation. In the operating phase, the components merge into a wise up protein folding robot with look-ahead capacities, which consistently solves a section of the HEs protein.
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spelling pubmed-78340572021-01-26 A protein folding robot driven by a self-taught agent Chang, Oscar Gonzales-Zubiate, Fernando A. Zhinin-Vera, Luis Valencia-Ramos, Rafael Pineda, Israel Diaz-Barrios, Antonio Biosystems Article This paper presents a computer simulation of a virtual robot that behaves as a peptide chain of the Hemagglutinin-Esterase protein (HEs) from human coronavirus. The robot can learn efficient protein folding policies by itself and then use them to solve HEs folding episodes. The proposed robotic unfolded structure inhabits a dynamic environment and is driven by a self-taught neural agent. The neural agent can read sensors and control the angles and interactions between individual amino acids. During the training phase, the agent uses reinforcement learning to explore new folding forms that conduce toward more significant rewards. The memory of the agent is implemented with neural networks. These neural networks are noise-balanced trained to satisfy the look for future conditions required by the Bellman equation. In the operating phase, the components merge into a wise up protein folding robot with look-ahead capacities, which consistently solves a section of the HEs protein. Elsevier B.V. 2021-03 2020-12-29 /pmc/articles/PMC7834057/ /pubmed/33358827 http://dx.doi.org/10.1016/j.biosystems.2020.104315 Text en © 2020 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Chang, Oscar
Gonzales-Zubiate, Fernando A.
Zhinin-Vera, Luis
Valencia-Ramos, Rafael
Pineda, Israel
Diaz-Barrios, Antonio
A protein folding robot driven by a self-taught agent
title A protein folding robot driven by a self-taught agent
title_full A protein folding robot driven by a self-taught agent
title_fullStr A protein folding robot driven by a self-taught agent
title_full_unstemmed A protein folding robot driven by a self-taught agent
title_short A protein folding robot driven by a self-taught agent
title_sort protein folding robot driven by a self-taught agent
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7834057/
https://www.ncbi.nlm.nih.gov/pubmed/33358827
http://dx.doi.org/10.1016/j.biosystems.2020.104315
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