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Clarifying predictions for COVID-19 from testing data: The example of New York State

With the spread of COVID-19 across the world, a large amount of data on reported cases has become available. We are studying here a potential bias induced by the daily number of tests which may be insufficient or vary over time. Indeed, tests are hard to produce at the early stage of the epidemic an...

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Detalles Bibliográficos
Autores principales: Griette, Quentin, Magal, Pierre
Formato: Online Artículo Texto
Lenguaje:English
Publicado: KeAi Publishing 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7834578/
https://www.ncbi.nlm.nih.gov/pubmed/33521405
http://dx.doi.org/10.1016/j.idm.2020.12.011
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author Griette, Quentin
Magal, Pierre
author_facet Griette, Quentin
Magal, Pierre
author_sort Griette, Quentin
collection PubMed
description With the spread of COVID-19 across the world, a large amount of data on reported cases has become available. We are studying here a potential bias induced by the daily number of tests which may be insufficient or vary over time. Indeed, tests are hard to produce at the early stage of the epidemic and can therefore be a limiting factor in the detection of cases. Such a limitation may have a strong impact on the reported cases data. Indeed, some cases may be missing from the official count because the number of tests was not sufficient on a given day. In this work, we propose a new differential equation epidemic model which uses the daily number of tests as an input. We obtain a good agreement between the model simulations and the reported cases data coming from the state of New York. We also explore the relationship between the dynamic of the number of tests and the dynamics of the cases. We obtain a good match between the data and the outcome of the model. Finally, by multiplying the number of tests by 2, 5, 10, and 100 we explore the consequences for the number of reported cases.
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spelling pubmed-78345782021-01-26 Clarifying predictions for COVID-19 from testing data: The example of New York State Griette, Quentin Magal, Pierre Infect Dis Model Special issue on Modelling and Forecasting the 2019 Novel Coronavirus (2019-nCoV) Transmission; Edited by Prof. Carlos Castillo-Chavez, Prof. Gerardo Chowell-Puente, Prof. Ping Yan, Prof. Jianhong Wu With the spread of COVID-19 across the world, a large amount of data on reported cases has become available. We are studying here a potential bias induced by the daily number of tests which may be insufficient or vary over time. Indeed, tests are hard to produce at the early stage of the epidemic and can therefore be a limiting factor in the detection of cases. Such a limitation may have a strong impact on the reported cases data. Indeed, some cases may be missing from the official count because the number of tests was not sufficient on a given day. In this work, we propose a new differential equation epidemic model which uses the daily number of tests as an input. We obtain a good agreement between the model simulations and the reported cases data coming from the state of New York. We also explore the relationship between the dynamic of the number of tests and the dynamics of the cases. We obtain a good match between the data and the outcome of the model. Finally, by multiplying the number of tests by 2, 5, 10, and 100 we explore the consequences for the number of reported cases. KeAi Publishing 2021-01-13 /pmc/articles/PMC7834578/ /pubmed/33521405 http://dx.doi.org/10.1016/j.idm.2020.12.011 Text en © 2021 The Authors. Production and hosting by Elsevier B.V. on behalf of KeAi Communications Co., Ltd. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Special issue on Modelling and Forecasting the 2019 Novel Coronavirus (2019-nCoV) Transmission; Edited by Prof. Carlos Castillo-Chavez, Prof. Gerardo Chowell-Puente, Prof. Ping Yan, Prof. Jianhong Wu
Griette, Quentin
Magal, Pierre
Clarifying predictions for COVID-19 from testing data: The example of New York State
title Clarifying predictions for COVID-19 from testing data: The example of New York State
title_full Clarifying predictions for COVID-19 from testing data: The example of New York State
title_fullStr Clarifying predictions for COVID-19 from testing data: The example of New York State
title_full_unstemmed Clarifying predictions for COVID-19 from testing data: The example of New York State
title_short Clarifying predictions for COVID-19 from testing data: The example of New York State
title_sort clarifying predictions for covid-19 from testing data: the example of new york state
topic Special issue on Modelling and Forecasting the 2019 Novel Coronavirus (2019-nCoV) Transmission; Edited by Prof. Carlos Castillo-Chavez, Prof. Gerardo Chowell-Puente, Prof. Ping Yan, Prof. Jianhong Wu
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7834578/
https://www.ncbi.nlm.nih.gov/pubmed/33521405
http://dx.doi.org/10.1016/j.idm.2020.12.011
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