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Longitudinal profiling of the blood transcriptome in an African green monkey aging model

African green monkeys (AGMs, Chlorocebus aethiops) are Old World monkeys which are used as experimental models in biomedical research. Recent technological advances in next generation sequencing are useful for unraveling the genetic mechanisms underlying senescence, aging, and age-related disease. T...

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Autores principales: Lee, Ja-Rang, Choe, Se-Hee, Kim, Young-Hyun, Cho, Hyeon-Mu, Park, Hye-Ri, Lee, Hee-Eun, Jin, Yeung Bae, Kim, Ji-Su, Jeong, Kang Jin, Park, Sang-Je, Huh, Jae-Won
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7834999/
https://www.ncbi.nlm.nih.gov/pubmed/33290253
http://dx.doi.org/10.18632/aging.202190
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author Lee, Ja-Rang
Choe, Se-Hee
Kim, Young-Hyun
Cho, Hyeon-Mu
Park, Hye-Ri
Lee, Hee-Eun
Jin, Yeung Bae
Kim, Ji-Su
Jeong, Kang Jin
Park, Sang-Je
Huh, Jae-Won
author_facet Lee, Ja-Rang
Choe, Se-Hee
Kim, Young-Hyun
Cho, Hyeon-Mu
Park, Hye-Ri
Lee, Hee-Eun
Jin, Yeung Bae
Kim, Ji-Su
Jeong, Kang Jin
Park, Sang-Je
Huh, Jae-Won
author_sort Lee, Ja-Rang
collection PubMed
description African green monkeys (AGMs, Chlorocebus aethiops) are Old World monkeys which are used as experimental models in biomedical research. Recent technological advances in next generation sequencing are useful for unraveling the genetic mechanisms underlying senescence, aging, and age-related disease. To elucidate the normal aging mechanisms in older age, the blood transcriptomes of nine healthy, aged AGMs (15‒23 years old), were analyzed over two years. We identified 910‒1399 accumulated differentially expressed genes (DEGs) in each individual, which increased with age. Aging-related DEGs were sorted across the three time points. A major proportion of the aging-related DEGs belonged to gene ontology (GO) categories involved in translation and rRNA metabolic processes. Next, we sorted common aging-related DEGs across three time points over two years. Common aging-related DEGs belonged to GO categories involved in translation, cellular component biogenesis, rRNA metabolic processes, cellular component organization, biogenesis, and RNA metabolic processes. Furthermore, we identified 29 candidate aging genes that were upregulated across the time series analysis. These candidate aging genes were linked to protein synthesis. This study describes a changing gene expression pattern in AGMs during aging using longitudinal transcriptome sequencing. The candidate aging genes identified here may be potential targets for the treatment of aging.
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spelling pubmed-78349992021-02-03 Longitudinal profiling of the blood transcriptome in an African green monkey aging model Lee, Ja-Rang Choe, Se-Hee Kim, Young-Hyun Cho, Hyeon-Mu Park, Hye-Ri Lee, Hee-Eun Jin, Yeung Bae Kim, Ji-Su Jeong, Kang Jin Park, Sang-Je Huh, Jae-Won Aging (Albany NY) Research Paper African green monkeys (AGMs, Chlorocebus aethiops) are Old World monkeys which are used as experimental models in biomedical research. Recent technological advances in next generation sequencing are useful for unraveling the genetic mechanisms underlying senescence, aging, and age-related disease. To elucidate the normal aging mechanisms in older age, the blood transcriptomes of nine healthy, aged AGMs (15‒23 years old), were analyzed over two years. We identified 910‒1399 accumulated differentially expressed genes (DEGs) in each individual, which increased with age. Aging-related DEGs were sorted across the three time points. A major proportion of the aging-related DEGs belonged to gene ontology (GO) categories involved in translation and rRNA metabolic processes. Next, we sorted common aging-related DEGs across three time points over two years. Common aging-related DEGs belonged to GO categories involved in translation, cellular component biogenesis, rRNA metabolic processes, cellular component organization, biogenesis, and RNA metabolic processes. Furthermore, we identified 29 candidate aging genes that were upregulated across the time series analysis. These candidate aging genes were linked to protein synthesis. This study describes a changing gene expression pattern in AGMs during aging using longitudinal transcriptome sequencing. The candidate aging genes identified here may be potential targets for the treatment of aging. Impact Journals 2020-12-03 /pmc/articles/PMC7834999/ /pubmed/33290253 http://dx.doi.org/10.18632/aging.202190 Text en Copyright: © 2020 Lee et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Lee, Ja-Rang
Choe, Se-Hee
Kim, Young-Hyun
Cho, Hyeon-Mu
Park, Hye-Ri
Lee, Hee-Eun
Jin, Yeung Bae
Kim, Ji-Su
Jeong, Kang Jin
Park, Sang-Je
Huh, Jae-Won
Longitudinal profiling of the blood transcriptome in an African green monkey aging model
title Longitudinal profiling of the blood transcriptome in an African green monkey aging model
title_full Longitudinal profiling of the blood transcriptome in an African green monkey aging model
title_fullStr Longitudinal profiling of the blood transcriptome in an African green monkey aging model
title_full_unstemmed Longitudinal profiling of the blood transcriptome in an African green monkey aging model
title_short Longitudinal profiling of the blood transcriptome in an African green monkey aging model
title_sort longitudinal profiling of the blood transcriptome in an african green monkey aging model
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7834999/
https://www.ncbi.nlm.nih.gov/pubmed/33290253
http://dx.doi.org/10.18632/aging.202190
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