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Exploring the new potential antiviral constituents of Moringa oliefera for SARS-COV-2 pathogenesis: An in silico molecular docking and dynamic studies
The interactions of two crucial proteins of COVID-19 have been investigated with potential antiviral compounds from Moringa oliefera using quantum chemical, molecular docking and dynamic methods. The results of the present investigation show that ellagic acid and apigenin possess the highest binding...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier B.V.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7835070/ https://www.ncbi.nlm.nih.gov/pubmed/33518774 http://dx.doi.org/10.1016/j.cplett.2021.138379 |
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author | Muhammad, Shabbir Hassan, Sayyeda Hira Al-Sehemi, Abdullah G. Shakir, Hafiz Abdullah Khan, Muhammad Irfan, Muhammad Iqbal, Javed |
author_facet | Muhammad, Shabbir Hassan, Sayyeda Hira Al-Sehemi, Abdullah G. Shakir, Hafiz Abdullah Khan, Muhammad Irfan, Muhammad Iqbal, Javed |
author_sort | Muhammad, Shabbir |
collection | PubMed |
description | The interactions of two crucial proteins of COVID-19 have been investigated with potential antiviral compounds from Moringa oliefera using quantum chemical, molecular docking and dynamic methods. The results of the present investigation show that ellagic acid and apigenin possess the highest binding affinities of −7.1 and −6.5 Kcal.mol(-1)against nsp9 and −6.9 and −7.1 Kcal.mol(−1) against nsp10, respectively. The dynamic behavior of individual proteins and their respective best docked ligand–protein complexes are also studied at 30 ns timescale. Both of these compounds also show the highest intestinal absorption and total clearance rate as compared to the other compounds under present investigation without any toxicity. |
format | Online Article Text |
id | pubmed-7835070 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier B.V. |
record_format | MEDLINE/PubMed |
spelling | pubmed-78350702021-01-26 Exploring the new potential antiviral constituents of Moringa oliefera for SARS-COV-2 pathogenesis: An in silico molecular docking and dynamic studies Muhammad, Shabbir Hassan, Sayyeda Hira Al-Sehemi, Abdullah G. Shakir, Hafiz Abdullah Khan, Muhammad Irfan, Muhammad Iqbal, Javed Chem Phys Lett Research Paper The interactions of two crucial proteins of COVID-19 have been investigated with potential antiviral compounds from Moringa oliefera using quantum chemical, molecular docking and dynamic methods. The results of the present investigation show that ellagic acid and apigenin possess the highest binding affinities of −7.1 and −6.5 Kcal.mol(-1)against nsp9 and −6.9 and −7.1 Kcal.mol(−1) against nsp10, respectively. The dynamic behavior of individual proteins and their respective best docked ligand–protein complexes are also studied at 30 ns timescale. Both of these compounds also show the highest intestinal absorption and total clearance rate as compared to the other compounds under present investigation without any toxicity. Elsevier B.V. 2021-03-16 2021-01-26 /pmc/articles/PMC7835070/ /pubmed/33518774 http://dx.doi.org/10.1016/j.cplett.2021.138379 Text en © 2021 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Research Paper Muhammad, Shabbir Hassan, Sayyeda Hira Al-Sehemi, Abdullah G. Shakir, Hafiz Abdullah Khan, Muhammad Irfan, Muhammad Iqbal, Javed Exploring the new potential antiviral constituents of Moringa oliefera for SARS-COV-2 pathogenesis: An in silico molecular docking and dynamic studies |
title | Exploring the new potential antiviral constituents of Moringa oliefera for SARS-COV-2 pathogenesis: An in silico molecular docking and dynamic studies |
title_full | Exploring the new potential antiviral constituents of Moringa oliefera for SARS-COV-2 pathogenesis: An in silico molecular docking and dynamic studies |
title_fullStr | Exploring the new potential antiviral constituents of Moringa oliefera for SARS-COV-2 pathogenesis: An in silico molecular docking and dynamic studies |
title_full_unstemmed | Exploring the new potential antiviral constituents of Moringa oliefera for SARS-COV-2 pathogenesis: An in silico molecular docking and dynamic studies |
title_short | Exploring the new potential antiviral constituents of Moringa oliefera for SARS-COV-2 pathogenesis: An in silico molecular docking and dynamic studies |
title_sort | exploring the new potential antiviral constituents of moringa oliefera for sars-cov-2 pathogenesis: an in silico molecular docking and dynamic studies |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7835070/ https://www.ncbi.nlm.nih.gov/pubmed/33518774 http://dx.doi.org/10.1016/j.cplett.2021.138379 |
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