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Exploring the new potential antiviral constituents of Moringa oliefera for SARS-COV-2 pathogenesis: An in silico molecular docking and dynamic studies

The interactions of two crucial proteins of COVID-19 have been investigated with potential antiviral compounds from Moringa oliefera using quantum chemical, molecular docking and dynamic methods. The results of the present investigation show that ellagic acid and apigenin possess the highest binding...

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Autores principales: Muhammad, Shabbir, Hassan, Sayyeda Hira, Al-Sehemi, Abdullah G., Shakir, Hafiz Abdullah, Khan, Muhammad, Irfan, Muhammad, Iqbal, Javed
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7835070/
https://www.ncbi.nlm.nih.gov/pubmed/33518774
http://dx.doi.org/10.1016/j.cplett.2021.138379
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author Muhammad, Shabbir
Hassan, Sayyeda Hira
Al-Sehemi, Abdullah G.
Shakir, Hafiz Abdullah
Khan, Muhammad
Irfan, Muhammad
Iqbal, Javed
author_facet Muhammad, Shabbir
Hassan, Sayyeda Hira
Al-Sehemi, Abdullah G.
Shakir, Hafiz Abdullah
Khan, Muhammad
Irfan, Muhammad
Iqbal, Javed
author_sort Muhammad, Shabbir
collection PubMed
description The interactions of two crucial proteins of COVID-19 have been investigated with potential antiviral compounds from Moringa oliefera using quantum chemical, molecular docking and dynamic methods. The results of the present investigation show that ellagic acid and apigenin possess the highest binding affinities of −7.1 and −6.5 Kcal.mol(-1)against nsp9 and −6.9 and −7.1 Kcal.mol(−1) against nsp10, respectively. The dynamic behavior of individual proteins and their respective best docked ligand–protein complexes are also studied at 30 ns timescale. Both of these compounds also show the highest intestinal absorption and total clearance rate as compared to the other compounds under present investigation without any toxicity.
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spelling pubmed-78350702021-01-26 Exploring the new potential antiviral constituents of Moringa oliefera for SARS-COV-2 pathogenesis: An in silico molecular docking and dynamic studies Muhammad, Shabbir Hassan, Sayyeda Hira Al-Sehemi, Abdullah G. Shakir, Hafiz Abdullah Khan, Muhammad Irfan, Muhammad Iqbal, Javed Chem Phys Lett Research Paper The interactions of two crucial proteins of COVID-19 have been investigated with potential antiviral compounds from Moringa oliefera using quantum chemical, molecular docking and dynamic methods. The results of the present investigation show that ellagic acid and apigenin possess the highest binding affinities of −7.1 and −6.5 Kcal.mol(-1)against nsp9 and −6.9 and −7.1 Kcal.mol(−1) against nsp10, respectively. The dynamic behavior of individual proteins and their respective best docked ligand–protein complexes are also studied at 30 ns timescale. Both of these compounds also show the highest intestinal absorption and total clearance rate as compared to the other compounds under present investigation without any toxicity. Elsevier B.V. 2021-03-16 2021-01-26 /pmc/articles/PMC7835070/ /pubmed/33518774 http://dx.doi.org/10.1016/j.cplett.2021.138379 Text en © 2021 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Research Paper
Muhammad, Shabbir
Hassan, Sayyeda Hira
Al-Sehemi, Abdullah G.
Shakir, Hafiz Abdullah
Khan, Muhammad
Irfan, Muhammad
Iqbal, Javed
Exploring the new potential antiviral constituents of Moringa oliefera for SARS-COV-2 pathogenesis: An in silico molecular docking and dynamic studies
title Exploring the new potential antiviral constituents of Moringa oliefera for SARS-COV-2 pathogenesis: An in silico molecular docking and dynamic studies
title_full Exploring the new potential antiviral constituents of Moringa oliefera for SARS-COV-2 pathogenesis: An in silico molecular docking and dynamic studies
title_fullStr Exploring the new potential antiviral constituents of Moringa oliefera for SARS-COV-2 pathogenesis: An in silico molecular docking and dynamic studies
title_full_unstemmed Exploring the new potential antiviral constituents of Moringa oliefera for SARS-COV-2 pathogenesis: An in silico molecular docking and dynamic studies
title_short Exploring the new potential antiviral constituents of Moringa oliefera for SARS-COV-2 pathogenesis: An in silico molecular docking and dynamic studies
title_sort exploring the new potential antiviral constituents of moringa oliefera for sars-cov-2 pathogenesis: an in silico molecular docking and dynamic studies
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7835070/
https://www.ncbi.nlm.nih.gov/pubmed/33518774
http://dx.doi.org/10.1016/j.cplett.2021.138379
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