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Physiological Network From Anthropometric and Blood Test Biomarkers
Currently, research in physiology focuses on molecular mechanisms underlying the functioning of living organisms. Reductionist strategies are used to decompose systems into their components and to measure changes of physiological variables between experimental conditions. However, how these isolated...
Autores principales: | , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7835885/ https://www.ncbi.nlm.nih.gov/pubmed/33510648 http://dx.doi.org/10.3389/fphys.2020.612598 |
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author | Barajas-Martínez, Antonio Ibarra-Coronado, Elizabeth Sierra-Vargas, Martha Patricia Cruz-Bautista, Ivette Almeda-Valdes, Paloma Aguilar-Salinas, Carlos A. Fossion, Ruben Stephens, Christopher R. Vargas-Domínguez, Claudia Atzatzi-Aguilar, Octavio Gamaliel Debray-García, Yazmín García-Torrentera, Rogelio Bobadilla, Karen Naranjo Meneses, María Augusta Mena Orozco, Dulce Abril Lam-Chung, César Ernesto Martínez Garcés, Vania Lecona, Octavio A. Marín-García, Arlex O. Frank, Alejandro Rivera, Ana Leonor |
author_facet | Barajas-Martínez, Antonio Ibarra-Coronado, Elizabeth Sierra-Vargas, Martha Patricia Cruz-Bautista, Ivette Almeda-Valdes, Paloma Aguilar-Salinas, Carlos A. Fossion, Ruben Stephens, Christopher R. Vargas-Domínguez, Claudia Atzatzi-Aguilar, Octavio Gamaliel Debray-García, Yazmín García-Torrentera, Rogelio Bobadilla, Karen Naranjo Meneses, María Augusta Mena Orozco, Dulce Abril Lam-Chung, César Ernesto Martínez Garcés, Vania Lecona, Octavio A. Marín-García, Arlex O. Frank, Alejandro Rivera, Ana Leonor |
author_sort | Barajas-Martínez, Antonio |
collection | PubMed |
description | Currently, research in physiology focuses on molecular mechanisms underlying the functioning of living organisms. Reductionist strategies are used to decompose systems into their components and to measure changes of physiological variables between experimental conditions. However, how these isolated physiological variables translate into the emergence -and collapse- of biological functions of the organism as a whole is often a less tractable question. To generate a useful representation of physiology as a system, known and unknown interactions between heterogeneous physiological components must be taken into account. In this work we use a Complex Inference Networks approach to build physiological networks from biomarkers. We employ two unrelated databases to generate Spearman correlation matrices of 81 and 54 physiological variables, respectively, including endocrine, mechanic, biochemical, anthropometric, physiological, and cellular variables. From these correlation matrices we generated physiological networks by selecting a p-value threshold indicating statistically significant links. We compared the networks from both samples to show which features are robust and representative for physiology in health. We found that although network topology is sensitive to the p-value threshold, an optimal value may be defined by combining criteria of stability of topological features and network connectedness. Unsupervised community detection algorithms allowed to obtain functional clusters that correlate well with current medical knowledge. Finally, we describe the topology of the physiological networks, which lie between random and ordered structural features, and may reflect system robustness and adaptability. Modularity of physiological networks allows to explore functional clusters that are consistent even when considering different physiological variables. Altogether Complex Inference Networks from biomarkers provide an efficient implementation of a systems biology approach that is visually understandable and robust. We hypothesize that physiological networks allow to translate concepts such as homeostasis into quantifiable properties of biological systems useful for determination and quantification of health and disease. |
format | Online Article Text |
id | pubmed-7835885 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-78358852021-01-27 Physiological Network From Anthropometric and Blood Test Biomarkers Barajas-Martínez, Antonio Ibarra-Coronado, Elizabeth Sierra-Vargas, Martha Patricia Cruz-Bautista, Ivette Almeda-Valdes, Paloma Aguilar-Salinas, Carlos A. Fossion, Ruben Stephens, Christopher R. Vargas-Domínguez, Claudia Atzatzi-Aguilar, Octavio Gamaliel Debray-García, Yazmín García-Torrentera, Rogelio Bobadilla, Karen Naranjo Meneses, María Augusta Mena Orozco, Dulce Abril Lam-Chung, César Ernesto Martínez Garcés, Vania Lecona, Octavio A. Marín-García, Arlex O. Frank, Alejandro Rivera, Ana Leonor Front Physiol Physiology Currently, research in physiology focuses on molecular mechanisms underlying the functioning of living organisms. Reductionist strategies are used to decompose systems into their components and to measure changes of physiological variables between experimental conditions. However, how these isolated physiological variables translate into the emergence -and collapse- of biological functions of the organism as a whole is often a less tractable question. To generate a useful representation of physiology as a system, known and unknown interactions between heterogeneous physiological components must be taken into account. In this work we use a Complex Inference Networks approach to build physiological networks from biomarkers. We employ two unrelated databases to generate Spearman correlation matrices of 81 and 54 physiological variables, respectively, including endocrine, mechanic, biochemical, anthropometric, physiological, and cellular variables. From these correlation matrices we generated physiological networks by selecting a p-value threshold indicating statistically significant links. We compared the networks from both samples to show which features are robust and representative for physiology in health. We found that although network topology is sensitive to the p-value threshold, an optimal value may be defined by combining criteria of stability of topological features and network connectedness. Unsupervised community detection algorithms allowed to obtain functional clusters that correlate well with current medical knowledge. Finally, we describe the topology of the physiological networks, which lie between random and ordered structural features, and may reflect system robustness and adaptability. Modularity of physiological networks allows to explore functional clusters that are consistent even when considering different physiological variables. Altogether Complex Inference Networks from biomarkers provide an efficient implementation of a systems biology approach that is visually understandable and robust. We hypothesize that physiological networks allow to translate concepts such as homeostasis into quantifiable properties of biological systems useful for determination and quantification of health and disease. Frontiers Media S.A. 2021-01-12 /pmc/articles/PMC7835885/ /pubmed/33510648 http://dx.doi.org/10.3389/fphys.2020.612598 Text en Copyright © 2021 Barajas-Martínez, Ibarra-Coronado, Sierra-Vargas, Cruz-Bautista, Almeda-Valdes, Aguilar-Salinas, Fossion, Stephens, Vargas-Domínguez, Atzatzi-Aguilar, Debray-García, García-Torrentera, Bobadilla, Naranjo Meneses, Mena Orozco, Lam-Chung, Martínez Garcés, Lecona, Marín-García, Frank and Rivera. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Physiology Barajas-Martínez, Antonio Ibarra-Coronado, Elizabeth Sierra-Vargas, Martha Patricia Cruz-Bautista, Ivette Almeda-Valdes, Paloma Aguilar-Salinas, Carlos A. Fossion, Ruben Stephens, Christopher R. Vargas-Domínguez, Claudia Atzatzi-Aguilar, Octavio Gamaliel Debray-García, Yazmín García-Torrentera, Rogelio Bobadilla, Karen Naranjo Meneses, María Augusta Mena Orozco, Dulce Abril Lam-Chung, César Ernesto Martínez Garcés, Vania Lecona, Octavio A. Marín-García, Arlex O. Frank, Alejandro Rivera, Ana Leonor Physiological Network From Anthropometric and Blood Test Biomarkers |
title | Physiological Network From Anthropometric and Blood Test Biomarkers |
title_full | Physiological Network From Anthropometric and Blood Test Biomarkers |
title_fullStr | Physiological Network From Anthropometric and Blood Test Biomarkers |
title_full_unstemmed | Physiological Network From Anthropometric and Blood Test Biomarkers |
title_short | Physiological Network From Anthropometric and Blood Test Biomarkers |
title_sort | physiological network from anthropometric and blood test biomarkers |
topic | Physiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7835885/ https://www.ncbi.nlm.nih.gov/pubmed/33510648 http://dx.doi.org/10.3389/fphys.2020.612598 |
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