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Complete chloroplast sequence of Fenerivia ghesquiereana (Annonaceae): a rare and endemic tree from Madagascar

Fenerivia ghesquiereana (Cavaco & Keraudren) R.M.K. Saunders (Annaonaceae) is a rare and endemic tree restricted to the warm tropical forests of Madagascar, a major global hotspot for biodiversity. Species in the genus are mostly restricted to a thin belt along the eastern edge of the island and...

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Autores principales: Wang, Yixi, Cvetković, Tijana, Aritsara, Amy N. A., Carrion, Angelo D. A., Strijk, Joeri S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7836981/
https://www.ncbi.nlm.nih.gov/pubmed/33542954
http://dx.doi.org/10.1080/23802359.2020.1855604
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author Wang, Yixi
Cvetković, Tijana
Aritsara, Amy N. A.
Carrion, Angelo D. A.
Strijk, Joeri S.
author_facet Wang, Yixi
Cvetković, Tijana
Aritsara, Amy N. A.
Carrion, Angelo D. A.
Strijk, Joeri S.
author_sort Wang, Yixi
collection PubMed
description Fenerivia ghesquiereana (Cavaco & Keraudren) R.M.K. Saunders (Annaonaceae) is a rare and endemic tree restricted to the warm tropical forests of Madagascar, a major global hotspot for biodiversity. Species in the genus are mostly restricted to a thin belt along the eastern edge of the island and remain under intense pressure due to deforestation for logging, mining and slash-and-burn agriculture (‘tavy’), despite national pledges to curb biodiversity losses and increase park protection to combat illegal logging and poaching. Here we report the complete chloroplast genome sequence of this species to support ongoing efforts to complete the (sub-)tribal classification of the family. The chloroplast sequence of F. ghesquiereana was 160,194 bp in length, including two inverted repeat regions of 26,093 bp, a large single-copy region of 89,041 bp and a small single-copy region of 18,967 bp. A total of 160 genes were annotated, of which 115 are coding, 37 are tRNA genes, and eight are rRNA genes. The overall GC content was 39%; this was higher in the IRs (43.4%) when compared to the LSC (30.7%) and the SSC (33.9%) regions. A Maximum Likelihood phylogenetic analysis with a selection of other plastomes in Annonaceae placed F. ghesquiereana as sister to Meiogyne hainanensis (Merr.) in subfamily Malmeoideae.
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spelling pubmed-78369812021-02-03 Complete chloroplast sequence of Fenerivia ghesquiereana (Annonaceae): a rare and endemic tree from Madagascar Wang, Yixi Cvetković, Tijana Aritsara, Amy N. A. Carrion, Angelo D. A. Strijk, Joeri S. Mitochondrial DNA B Resour Mitogenome Announcement Fenerivia ghesquiereana (Cavaco & Keraudren) R.M.K. Saunders (Annaonaceae) is a rare and endemic tree restricted to the warm tropical forests of Madagascar, a major global hotspot for biodiversity. Species in the genus are mostly restricted to a thin belt along the eastern edge of the island and remain under intense pressure due to deforestation for logging, mining and slash-and-burn agriculture (‘tavy’), despite national pledges to curb biodiversity losses and increase park protection to combat illegal logging and poaching. Here we report the complete chloroplast genome sequence of this species to support ongoing efforts to complete the (sub-)tribal classification of the family. The chloroplast sequence of F. ghesquiereana was 160,194 bp in length, including two inverted repeat regions of 26,093 bp, a large single-copy region of 89,041 bp and a small single-copy region of 18,967 bp. A total of 160 genes were annotated, of which 115 are coding, 37 are tRNA genes, and eight are rRNA genes. The overall GC content was 39%; this was higher in the IRs (43.4%) when compared to the LSC (30.7%) and the SSC (33.9%) regions. A Maximum Likelihood phylogenetic analysis with a selection of other plastomes in Annonaceae placed F. ghesquiereana as sister to Meiogyne hainanensis (Merr.) in subfamily Malmeoideae. Taylor & Francis 2021-01-16 /pmc/articles/PMC7836981/ /pubmed/33542954 http://dx.doi.org/10.1080/23802359.2020.1855604 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wang, Yixi
Cvetković, Tijana
Aritsara, Amy N. A.
Carrion, Angelo D. A.
Strijk, Joeri S.
Complete chloroplast sequence of Fenerivia ghesquiereana (Annonaceae): a rare and endemic tree from Madagascar
title Complete chloroplast sequence of Fenerivia ghesquiereana (Annonaceae): a rare and endemic tree from Madagascar
title_full Complete chloroplast sequence of Fenerivia ghesquiereana (Annonaceae): a rare and endemic tree from Madagascar
title_fullStr Complete chloroplast sequence of Fenerivia ghesquiereana (Annonaceae): a rare and endemic tree from Madagascar
title_full_unstemmed Complete chloroplast sequence of Fenerivia ghesquiereana (Annonaceae): a rare and endemic tree from Madagascar
title_short Complete chloroplast sequence of Fenerivia ghesquiereana (Annonaceae): a rare and endemic tree from Madagascar
title_sort complete chloroplast sequence of fenerivia ghesquiereana (annonaceae): a rare and endemic tree from madagascar
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7836981/
https://www.ncbi.nlm.nih.gov/pubmed/33542954
http://dx.doi.org/10.1080/23802359.2020.1855604
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