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Improving probabilistic infectious disease forecasting through coherence

With an estimated $10.4 billion in medical costs and 31.4 million outpatient visits each year, influenza poses a serious burden of disease in the United States. To provide insights and advance warning into the spread of influenza, the U.S. Centers for Disease Control and Prevention (CDC) runs a chal...

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Detalles Bibliográficos
Autores principales: Gibson, Graham Casey, Moran, Kelly R., Reich, Nicholas G., Osthus, Dave
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7837472/
https://www.ncbi.nlm.nih.gov/pubmed/33406068
http://dx.doi.org/10.1371/journal.pcbi.1007623
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author Gibson, Graham Casey
Moran, Kelly R.
Reich, Nicholas G.
Osthus, Dave
author_facet Gibson, Graham Casey
Moran, Kelly R.
Reich, Nicholas G.
Osthus, Dave
author_sort Gibson, Graham Casey
collection PubMed
description With an estimated $10.4 billion in medical costs and 31.4 million outpatient visits each year, influenza poses a serious burden of disease in the United States. To provide insights and advance warning into the spread of influenza, the U.S. Centers for Disease Control and Prevention (CDC) runs a challenge for forecasting weighted influenza-like illness (wILI) at the national and regional level. Many models produce independent forecasts for each geographical unit, ignoring the constraint that the national wILI is a weighted sum of regional wILI, where the weights correspond to the population size of the region. We propose a novel algorithm that transforms a set of independent forecast distributions to obey this constraint, which we refer to as probabilistically coherent. Enforcing probabilistic coherence led to an increase in forecast skill for 79% of the models we tested over multiple flu seasons, highlighting the importance of respecting the forecasting system’s geographical hierarchy.
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spelling pubmed-78374722021-02-02 Improving probabilistic infectious disease forecasting through coherence Gibson, Graham Casey Moran, Kelly R. Reich, Nicholas G. Osthus, Dave PLoS Comput Biol Research Article With an estimated $10.4 billion in medical costs and 31.4 million outpatient visits each year, influenza poses a serious burden of disease in the United States. To provide insights and advance warning into the spread of influenza, the U.S. Centers for Disease Control and Prevention (CDC) runs a challenge for forecasting weighted influenza-like illness (wILI) at the national and regional level. Many models produce independent forecasts for each geographical unit, ignoring the constraint that the national wILI is a weighted sum of regional wILI, where the weights correspond to the population size of the region. We propose a novel algorithm that transforms a set of independent forecast distributions to obey this constraint, which we refer to as probabilistically coherent. Enforcing probabilistic coherence led to an increase in forecast skill for 79% of the models we tested over multiple flu seasons, highlighting the importance of respecting the forecasting system’s geographical hierarchy. Public Library of Science 2021-01-06 /pmc/articles/PMC7837472/ /pubmed/33406068 http://dx.doi.org/10.1371/journal.pcbi.1007623 Text en https://creativecommons.org/publicdomain/zero/1.0/ This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication.
spellingShingle Research Article
Gibson, Graham Casey
Moran, Kelly R.
Reich, Nicholas G.
Osthus, Dave
Improving probabilistic infectious disease forecasting through coherence
title Improving probabilistic infectious disease forecasting through coherence
title_full Improving probabilistic infectious disease forecasting through coherence
title_fullStr Improving probabilistic infectious disease forecasting through coherence
title_full_unstemmed Improving probabilistic infectious disease forecasting through coherence
title_short Improving probabilistic infectious disease forecasting through coherence
title_sort improving probabilistic infectious disease forecasting through coherence
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7837472/
https://www.ncbi.nlm.nih.gov/pubmed/33406068
http://dx.doi.org/10.1371/journal.pcbi.1007623
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