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Genome Assembly and Analyses of the Macrofungus Macrocybe gigantea

Macrocybe gigantea (M. gigantea) is a macrofungus genus that contains a big number of fairly fleshy gilled mushrooms with white spores. This macrofungus produces diverse bioactive compounds, antioxidants, and water-soluble polysaccharides. However, the genomic resources of this species remain unknow...

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Autores principales: Kui, Ling, Zhang, Zhe, Wang, Yangzi, Zhang, Yesheng, Li, Shiming, Dong, Xiao, Xia, Qiuju, Sheng, Jun, Wang, Jian, Dong, Yang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7841450/
https://www.ncbi.nlm.nih.gov/pubmed/33542921
http://dx.doi.org/10.1155/2021/6656365
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author Kui, Ling
Zhang, Zhe
Wang, Yangzi
Zhang, Yesheng
Li, Shiming
Dong, Xiao
Xia, Qiuju
Sheng, Jun
Wang, Jian
Dong, Yang
author_facet Kui, Ling
Zhang, Zhe
Wang, Yangzi
Zhang, Yesheng
Li, Shiming
Dong, Xiao
Xia, Qiuju
Sheng, Jun
Wang, Jian
Dong, Yang
author_sort Kui, Ling
collection PubMed
description Macrocybe gigantea (M. gigantea) is a macrofungus genus that contains a big number of fairly fleshy gilled mushrooms with white spores. This macrofungus produces diverse bioactive compounds, antioxidants, and water-soluble polysaccharides. However, the genomic resources of this species remain unknown. Here, we assembled the genome of M. gigantea (41.23 Mb) into 336 scaffolds with a N50 size of 374,455 bp and compared it with the genomes of eleven other macrofungi. Comparative genomics study confirmed that M. gigantea belonged to the Macrocybe genus, a stand-alone genus different from the Tricholoma genus. In addition, we found that glycosyl hydrolase family 28 (GH28) in M. gigantea shared conserved motifs that were significantly different from their counterparts in Tricholoma. The genomic resource uncovered by this study will enhance our understanding of fungi biology, especially the differences in their growth rates and energy metabolism.
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spelling pubmed-78414502021-02-03 Genome Assembly and Analyses of the Macrofungus Macrocybe gigantea Kui, Ling Zhang, Zhe Wang, Yangzi Zhang, Yesheng Li, Shiming Dong, Xiao Xia, Qiuju Sheng, Jun Wang, Jian Dong, Yang Biomed Res Int Research Article Macrocybe gigantea (M. gigantea) is a macrofungus genus that contains a big number of fairly fleshy gilled mushrooms with white spores. This macrofungus produces diverse bioactive compounds, antioxidants, and water-soluble polysaccharides. However, the genomic resources of this species remain unknown. Here, we assembled the genome of M. gigantea (41.23 Mb) into 336 scaffolds with a N50 size of 374,455 bp and compared it with the genomes of eleven other macrofungi. Comparative genomics study confirmed that M. gigantea belonged to the Macrocybe genus, a stand-alone genus different from the Tricholoma genus. In addition, we found that glycosyl hydrolase family 28 (GH28) in M. gigantea shared conserved motifs that were significantly different from their counterparts in Tricholoma. The genomic resource uncovered by this study will enhance our understanding of fungi biology, especially the differences in their growth rates and energy metabolism. Hindawi 2021-01-18 /pmc/articles/PMC7841450/ /pubmed/33542921 http://dx.doi.org/10.1155/2021/6656365 Text en Copyright © 2021 Ling Kui et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Kui, Ling
Zhang, Zhe
Wang, Yangzi
Zhang, Yesheng
Li, Shiming
Dong, Xiao
Xia, Qiuju
Sheng, Jun
Wang, Jian
Dong, Yang
Genome Assembly and Analyses of the Macrofungus Macrocybe gigantea
title Genome Assembly and Analyses of the Macrofungus Macrocybe gigantea
title_full Genome Assembly and Analyses of the Macrofungus Macrocybe gigantea
title_fullStr Genome Assembly and Analyses of the Macrofungus Macrocybe gigantea
title_full_unstemmed Genome Assembly and Analyses of the Macrofungus Macrocybe gigantea
title_short Genome Assembly and Analyses of the Macrofungus Macrocybe gigantea
title_sort genome assembly and analyses of the macrofungus macrocybe gigantea
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7841450/
https://www.ncbi.nlm.nih.gov/pubmed/33542921
http://dx.doi.org/10.1155/2021/6656365
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