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Genome Assembly and Analyses of the Macrofungus Macrocybe gigantea
Macrocybe gigantea (M. gigantea) is a macrofungus genus that contains a big number of fairly fleshy gilled mushrooms with white spores. This macrofungus produces diverse bioactive compounds, antioxidants, and water-soluble polysaccharides. However, the genomic resources of this species remain unknow...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7841450/ https://www.ncbi.nlm.nih.gov/pubmed/33542921 http://dx.doi.org/10.1155/2021/6656365 |
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author | Kui, Ling Zhang, Zhe Wang, Yangzi Zhang, Yesheng Li, Shiming Dong, Xiao Xia, Qiuju Sheng, Jun Wang, Jian Dong, Yang |
author_facet | Kui, Ling Zhang, Zhe Wang, Yangzi Zhang, Yesheng Li, Shiming Dong, Xiao Xia, Qiuju Sheng, Jun Wang, Jian Dong, Yang |
author_sort | Kui, Ling |
collection | PubMed |
description | Macrocybe gigantea (M. gigantea) is a macrofungus genus that contains a big number of fairly fleshy gilled mushrooms with white spores. This macrofungus produces diverse bioactive compounds, antioxidants, and water-soluble polysaccharides. However, the genomic resources of this species remain unknown. Here, we assembled the genome of M. gigantea (41.23 Mb) into 336 scaffolds with a N50 size of 374,455 bp and compared it with the genomes of eleven other macrofungi. Comparative genomics study confirmed that M. gigantea belonged to the Macrocybe genus, a stand-alone genus different from the Tricholoma genus. In addition, we found that glycosyl hydrolase family 28 (GH28) in M. gigantea shared conserved motifs that were significantly different from their counterparts in Tricholoma. The genomic resource uncovered by this study will enhance our understanding of fungi biology, especially the differences in their growth rates and energy metabolism. |
format | Online Article Text |
id | pubmed-7841450 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-78414502021-02-03 Genome Assembly and Analyses of the Macrofungus Macrocybe gigantea Kui, Ling Zhang, Zhe Wang, Yangzi Zhang, Yesheng Li, Shiming Dong, Xiao Xia, Qiuju Sheng, Jun Wang, Jian Dong, Yang Biomed Res Int Research Article Macrocybe gigantea (M. gigantea) is a macrofungus genus that contains a big number of fairly fleshy gilled mushrooms with white spores. This macrofungus produces diverse bioactive compounds, antioxidants, and water-soluble polysaccharides. However, the genomic resources of this species remain unknown. Here, we assembled the genome of M. gigantea (41.23 Mb) into 336 scaffolds with a N50 size of 374,455 bp and compared it with the genomes of eleven other macrofungi. Comparative genomics study confirmed that M. gigantea belonged to the Macrocybe genus, a stand-alone genus different from the Tricholoma genus. In addition, we found that glycosyl hydrolase family 28 (GH28) in M. gigantea shared conserved motifs that were significantly different from their counterparts in Tricholoma. The genomic resource uncovered by this study will enhance our understanding of fungi biology, especially the differences in their growth rates and energy metabolism. Hindawi 2021-01-18 /pmc/articles/PMC7841450/ /pubmed/33542921 http://dx.doi.org/10.1155/2021/6656365 Text en Copyright © 2021 Ling Kui et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Kui, Ling Zhang, Zhe Wang, Yangzi Zhang, Yesheng Li, Shiming Dong, Xiao Xia, Qiuju Sheng, Jun Wang, Jian Dong, Yang Genome Assembly and Analyses of the Macrofungus Macrocybe gigantea |
title | Genome Assembly and Analyses of the Macrofungus Macrocybe gigantea |
title_full | Genome Assembly and Analyses of the Macrofungus Macrocybe gigantea |
title_fullStr | Genome Assembly and Analyses of the Macrofungus Macrocybe gigantea |
title_full_unstemmed | Genome Assembly and Analyses of the Macrofungus Macrocybe gigantea |
title_short | Genome Assembly and Analyses of the Macrofungus Macrocybe gigantea |
title_sort | genome assembly and analyses of the macrofungus macrocybe gigantea |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7841450/ https://www.ncbi.nlm.nih.gov/pubmed/33542921 http://dx.doi.org/10.1155/2021/6656365 |
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