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Forecasting System of Computational Time of DFT/TDDFT Calculations under the Multiverse Ansatz via Machine Learning and Cheminformatics
[Image: see text] With the view of achieving a better performance in task assignment and load-balancing, a top-level designed forecasting system for predicting computational times of density-functional theory (DFT)/time-dependent DFT (TDDFT) calculations is presented. The computational time is assum...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7841786/ https://www.ncbi.nlm.nih.gov/pubmed/33521440 http://dx.doi.org/10.1021/acsomega.0c04981 |
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author | Ma, Shuo Ma, Yingjin Zhang, Baohua Tian, Yingqi Jin, Zhong |
author_facet | Ma, Shuo Ma, Yingjin Zhang, Baohua Tian, Yingqi Jin, Zhong |
author_sort | Ma, Shuo |
collection | PubMed |
description | [Image: see text] With the view of achieving a better performance in task assignment and load-balancing, a top-level designed forecasting system for predicting computational times of density-functional theory (DFT)/time-dependent DFT (TDDFT) calculations is presented. The computational time is assumed as the intrinsic property for the molecule. Based on this assumption, the forecasting system is established using the “reinforced concrete”, which combines the cheminformatics, several machine-learning (ML) models, and the framework of many-world interpretation (MWI) in multiverse ansatz. Herein, the cheminformatics is used to recognize the topological structure of molecules, the ML models are used to build the relationships between topology and computational cost, and the MWI framework is used to hold various combinations of DFT functionals and basis sets in DFT/TDDFT calculations. Calculated results of molecules from the DrugBank dataset show that (1) it can give quantitative predictions of computational costs, typical mean relative errors can be less than 0.2 for DFT/TDDFT calculations with derivations of ±25% using the exactly pretrained ML models and (2) it can also be employed to various combinations of DFT functional and basis set cases without exactly pretrained ML models, while only slightly enlarge predicting errors. |
format | Online Article Text |
id | pubmed-7841786 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-78417862021-01-29 Forecasting System of Computational Time of DFT/TDDFT Calculations under the Multiverse Ansatz via Machine Learning and Cheminformatics Ma, Shuo Ma, Yingjin Zhang, Baohua Tian, Yingqi Jin, Zhong ACS Omega [Image: see text] With the view of achieving a better performance in task assignment and load-balancing, a top-level designed forecasting system for predicting computational times of density-functional theory (DFT)/time-dependent DFT (TDDFT) calculations is presented. The computational time is assumed as the intrinsic property for the molecule. Based on this assumption, the forecasting system is established using the “reinforced concrete”, which combines the cheminformatics, several machine-learning (ML) models, and the framework of many-world interpretation (MWI) in multiverse ansatz. Herein, the cheminformatics is used to recognize the topological structure of molecules, the ML models are used to build the relationships between topology and computational cost, and the MWI framework is used to hold various combinations of DFT functionals and basis sets in DFT/TDDFT calculations. Calculated results of molecules from the DrugBank dataset show that (1) it can give quantitative predictions of computational costs, typical mean relative errors can be less than 0.2 for DFT/TDDFT calculations with derivations of ±25% using the exactly pretrained ML models and (2) it can also be employed to various combinations of DFT functional and basis set cases without exactly pretrained ML models, while only slightly enlarge predicting errors. American Chemical Society 2021-01-14 /pmc/articles/PMC7841786/ /pubmed/33521440 http://dx.doi.org/10.1021/acsomega.0c04981 Text en © 2021 The Authors. Published by American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes. |
spellingShingle | Ma, Shuo Ma, Yingjin Zhang, Baohua Tian, Yingqi Jin, Zhong Forecasting System of Computational Time of DFT/TDDFT Calculations under the Multiverse Ansatz via Machine Learning and Cheminformatics |
title | Forecasting System of Computational Time of DFT/TDDFT
Calculations under the Multiverse Ansatz via Machine Learning and
Cheminformatics |
title_full | Forecasting System of Computational Time of DFT/TDDFT
Calculations under the Multiverse Ansatz via Machine Learning and
Cheminformatics |
title_fullStr | Forecasting System of Computational Time of DFT/TDDFT
Calculations under the Multiverse Ansatz via Machine Learning and
Cheminformatics |
title_full_unstemmed | Forecasting System of Computational Time of DFT/TDDFT
Calculations under the Multiverse Ansatz via Machine Learning and
Cheminformatics |
title_short | Forecasting System of Computational Time of DFT/TDDFT
Calculations under the Multiverse Ansatz via Machine Learning and
Cheminformatics |
title_sort | forecasting system of computational time of dft/tddft
calculations under the multiverse ansatz via machine learning and
cheminformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7841786/ https://www.ncbi.nlm.nih.gov/pubmed/33521440 http://dx.doi.org/10.1021/acsomega.0c04981 |
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