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A cloud platform for atomic pair distribution function analysis: PDFitc
A cloud web platform for analysis and interpretation of atomic pair distribution function (PDF) data (PDFitc) is described. The platform is able to host applications for PDF analysis to help researchers study the local and nanoscale structure of nanostructured materials. The applications are designe...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7842210/ https://www.ncbi.nlm.nih.gov/pubmed/33399126 http://dx.doi.org/10.1107/S2053273320013066 |
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author | Yang, Long Culbertson, Elizabeth A. Thomas, Nancy K. Vuong, Hung T. Kjær, Emil T. S. Jensen, Kirsten M. Ø. Tucker, Matthew G. Billinge, Simon J. L. |
author_facet | Yang, Long Culbertson, Elizabeth A. Thomas, Nancy K. Vuong, Hung T. Kjær, Emil T. S. Jensen, Kirsten M. Ø. Tucker, Matthew G. Billinge, Simon J. L. |
author_sort | Yang, Long |
collection | PubMed |
description | A cloud web platform for analysis and interpretation of atomic pair distribution function (PDF) data (PDFitc) is described. The platform is able to host applications for PDF analysis to help researchers study the local and nanoscale structure of nanostructured materials. The applications are designed to be powerful and easy to use and can, and will, be extended over time through community adoption and development. The currently available PDF analysis applications, structureMining, spacegroupMining and similarityMapping, are described. In the first and second the user uploads a single PDF and the application returns a list of best-fit candidate structures, and the most likely space group of the underlying structure, respectively. In the third, the user can upload a set of measured or calculated PDFs and the application returns a matrix of Pearson correlations, allowing assessment of the similarity between different data sets. structureMining is presented here as an example to show the easy-to-use workflow on PDFitc. In the future, as well as using the PDFitc applications for data analysis, it is hoped that the community will contribute their own codes and software to the platform. |
format | Online Article Text |
id | pubmed-7842210 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-78422102021-02-05 A cloud platform for atomic pair distribution function analysis: PDFitc Yang, Long Culbertson, Elizabeth A. Thomas, Nancy K. Vuong, Hung T. Kjær, Emil T. S. Jensen, Kirsten M. Ø. Tucker, Matthew G. Billinge, Simon J. L. Acta Crystallogr A Found Adv Research Papers A cloud web platform for analysis and interpretation of atomic pair distribution function (PDF) data (PDFitc) is described. The platform is able to host applications for PDF analysis to help researchers study the local and nanoscale structure of nanostructured materials. The applications are designed to be powerful and easy to use and can, and will, be extended over time through community adoption and development. The currently available PDF analysis applications, structureMining, spacegroupMining and similarityMapping, are described. In the first and second the user uploads a single PDF and the application returns a list of best-fit candidate structures, and the most likely space group of the underlying structure, respectively. In the third, the user can upload a set of measured or calculated PDFs and the application returns a matrix of Pearson correlations, allowing assessment of the similarity between different data sets. structureMining is presented here as an example to show the easy-to-use workflow on PDFitc. In the future, as well as using the PDFitc applications for data analysis, it is hoped that the community will contribute their own codes and software to the platform. International Union of Crystallography 2021-01-05 /pmc/articles/PMC7842210/ /pubmed/33399126 http://dx.doi.org/10.1107/S2053273320013066 Text en © Long Yang et al. 2021 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Papers Yang, Long Culbertson, Elizabeth A. Thomas, Nancy K. Vuong, Hung T. Kjær, Emil T. S. Jensen, Kirsten M. Ø. Tucker, Matthew G. Billinge, Simon J. L. A cloud platform for atomic pair distribution function analysis: PDFitc |
title | A cloud platform for atomic pair distribution function analysis: PDFitc
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title_full | A cloud platform for atomic pair distribution function analysis: PDFitc
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title_fullStr | A cloud platform for atomic pair distribution function analysis: PDFitc
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title_full_unstemmed | A cloud platform for atomic pair distribution function analysis: PDFitc
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title_short | A cloud platform for atomic pair distribution function analysis: PDFitc
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title_sort | cloud platform for atomic pair distribution function analysis: pdfitc |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7842210/ https://www.ncbi.nlm.nih.gov/pubmed/33399126 http://dx.doi.org/10.1107/S2053273320013066 |
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