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Evaluation of a multiplex PCR method for the detection of porcine parvovirus types 1 through 7 using various field samples

Porcine parvoviruses (PPVs) are small, nonenveloped DNA viruses that are widespread in the global pig population. PPV type 1 (PPV1) is a major causative agent of reproductive failure and has been recognized since the 1960s. In recent decades, novel PPVs have been identified and designated as PPVs 2...

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Autores principales: Kim, Seung-Chai, Jeong, Chang-Gi, Nazki, Salik, Lee, Sim-In, Baek, Ye-Chan, Jung, Yong-Jin, Kim, Won-Il
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7842984/
https://www.ncbi.nlm.nih.gov/pubmed/33508002
http://dx.doi.org/10.1371/journal.pone.0245699
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author Kim, Seung-Chai
Jeong, Chang-Gi
Nazki, Salik
Lee, Sim-In
Baek, Ye-Chan
Jung, Yong-Jin
Kim, Won-Il
author_facet Kim, Seung-Chai
Jeong, Chang-Gi
Nazki, Salik
Lee, Sim-In
Baek, Ye-Chan
Jung, Yong-Jin
Kim, Won-Il
author_sort Kim, Seung-Chai
collection PubMed
description Porcine parvoviruses (PPVs) are small, nonenveloped DNA viruses that are widespread in the global pig population. PPV type 1 (PPV1) is a major causative agent of reproductive failure and has been recognized since the 1960s. In recent decades, novel PPVs have been identified and designated as PPVs 2 through 7 (PPV2~PPV7). Although the epidemiological impacts of these newly recognized parvoviruses on pigs are largely unknown, continuous surveillance of these PPVs is needed. The aim of this study was to develop an improved and efficient detection tool for these PPVs and to assess the developed method with field samples. Using 7 sets of newly designed primers, a multiplex polymerase chain reaction (mPCR) protocol was developed for the simultaneous detection of the seven genotypes of PPV (PPV1~PPV7). The sensitivity of the mPCR assay was analyzed, and the detection limit was determined to be 3×10(3) viral copies. The assay was highly specific in detecting one or more of the viruses in various combinations in specimens. The mPCR method was evaluated with 80 serum samples, 40 lung or lymph node samples and 40 intestine or fecal samples. When applied to these samples, the mPCR method could detect the 7 viruses simultaneously, providing rapid results regarding infection and coinfection status. In conclusion, the developed mPCR assay can be utilized as an effective and accurate diagnostic tool for rapid differential detection and epidemiological surveillance of various PPVs in numerous types of field samples.
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spelling pubmed-78429842021-02-04 Evaluation of a multiplex PCR method for the detection of porcine parvovirus types 1 through 7 using various field samples Kim, Seung-Chai Jeong, Chang-Gi Nazki, Salik Lee, Sim-In Baek, Ye-Chan Jung, Yong-Jin Kim, Won-Il PLoS One Research Article Porcine parvoviruses (PPVs) are small, nonenveloped DNA viruses that are widespread in the global pig population. PPV type 1 (PPV1) is a major causative agent of reproductive failure and has been recognized since the 1960s. In recent decades, novel PPVs have been identified and designated as PPVs 2 through 7 (PPV2~PPV7). Although the epidemiological impacts of these newly recognized parvoviruses on pigs are largely unknown, continuous surveillance of these PPVs is needed. The aim of this study was to develop an improved and efficient detection tool for these PPVs and to assess the developed method with field samples. Using 7 sets of newly designed primers, a multiplex polymerase chain reaction (mPCR) protocol was developed for the simultaneous detection of the seven genotypes of PPV (PPV1~PPV7). The sensitivity of the mPCR assay was analyzed, and the detection limit was determined to be 3×10(3) viral copies. The assay was highly specific in detecting one or more of the viruses in various combinations in specimens. The mPCR method was evaluated with 80 serum samples, 40 lung or lymph node samples and 40 intestine or fecal samples. When applied to these samples, the mPCR method could detect the 7 viruses simultaneously, providing rapid results regarding infection and coinfection status. In conclusion, the developed mPCR assay can be utilized as an effective and accurate diagnostic tool for rapid differential detection and epidemiological surveillance of various PPVs in numerous types of field samples. Public Library of Science 2021-01-28 /pmc/articles/PMC7842984/ /pubmed/33508002 http://dx.doi.org/10.1371/journal.pone.0245699 Text en © 2021 Kim et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Kim, Seung-Chai
Jeong, Chang-Gi
Nazki, Salik
Lee, Sim-In
Baek, Ye-Chan
Jung, Yong-Jin
Kim, Won-Il
Evaluation of a multiplex PCR method for the detection of porcine parvovirus types 1 through 7 using various field samples
title Evaluation of a multiplex PCR method for the detection of porcine parvovirus types 1 through 7 using various field samples
title_full Evaluation of a multiplex PCR method for the detection of porcine parvovirus types 1 through 7 using various field samples
title_fullStr Evaluation of a multiplex PCR method for the detection of porcine parvovirus types 1 through 7 using various field samples
title_full_unstemmed Evaluation of a multiplex PCR method for the detection of porcine parvovirus types 1 through 7 using various field samples
title_short Evaluation of a multiplex PCR method for the detection of porcine parvovirus types 1 through 7 using various field samples
title_sort evaluation of a multiplex pcr method for the detection of porcine parvovirus types 1 through 7 using various field samples
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7842984/
https://www.ncbi.nlm.nih.gov/pubmed/33508002
http://dx.doi.org/10.1371/journal.pone.0245699
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