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Identification of drug combinations on the basis of machine learning to maximize anti-aging effects

Aging is a multifactorial process that involves numerous genetic changes, so identifying anti-aging agents is quite challenging. Age-associated genetic factors must be better understood to search appropriately for anti-aging agents. We utilized an aging-related gene expression pattern-trained machin...

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Autores principales: Kim, Sun Kyung, Goughnour, Peter C., Lee, Eui Jin, Kim, Myeong Hyun, Chae, Hee Jin, Yun, Gwang Yeul, Kim, Yi Rang, Choi, Jin Woo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7843016/
https://www.ncbi.nlm.nih.gov/pubmed/33507975
http://dx.doi.org/10.1371/journal.pone.0246106
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author Kim, Sun Kyung
Goughnour, Peter C.
Lee, Eui Jin
Kim, Myeong Hyun
Chae, Hee Jin
Yun, Gwang Yeul
Kim, Yi Rang
Choi, Jin Woo
author_facet Kim, Sun Kyung
Goughnour, Peter C.
Lee, Eui Jin
Kim, Myeong Hyun
Chae, Hee Jin
Yun, Gwang Yeul
Kim, Yi Rang
Choi, Jin Woo
author_sort Kim, Sun Kyung
collection PubMed
description Aging is a multifactorial process that involves numerous genetic changes, so identifying anti-aging agents is quite challenging. Age-associated genetic factors must be better understood to search appropriately for anti-aging agents. We utilized an aging-related gene expression pattern-trained machine learning system that can implement reversible changes in aging by linking combinatory drugs. In silico gene expression pattern-based drug repositioning strategies, such as connectivity map, have been developed as a method for unique drug discovery. However, these strategies have limitations such as lists that differ for input and drug-inducing genes or constraints to compare experimental cell lines to target diseases. To address this issue and improve the prediction success rate, we modified the original version of expression profiles with a stepwise-filtered method. We utilized a machine learning system called deep-neural network (DNN). Here we report that combinational drug pairs using differential expressed genes (DEG) had a more enhanced anti-aging effect compared with single independent treatments on leukemia cells. This study shows potential drug combinations to retard the effects of aging with higher efficacy using innovative machine learning techniques.
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spelling pubmed-78430162021-02-04 Identification of drug combinations on the basis of machine learning to maximize anti-aging effects Kim, Sun Kyung Goughnour, Peter C. Lee, Eui Jin Kim, Myeong Hyun Chae, Hee Jin Yun, Gwang Yeul Kim, Yi Rang Choi, Jin Woo PLoS One Research Article Aging is a multifactorial process that involves numerous genetic changes, so identifying anti-aging agents is quite challenging. Age-associated genetic factors must be better understood to search appropriately for anti-aging agents. We utilized an aging-related gene expression pattern-trained machine learning system that can implement reversible changes in aging by linking combinatory drugs. In silico gene expression pattern-based drug repositioning strategies, such as connectivity map, have been developed as a method for unique drug discovery. However, these strategies have limitations such as lists that differ for input and drug-inducing genes or constraints to compare experimental cell lines to target diseases. To address this issue and improve the prediction success rate, we modified the original version of expression profiles with a stepwise-filtered method. We utilized a machine learning system called deep-neural network (DNN). Here we report that combinational drug pairs using differential expressed genes (DEG) had a more enhanced anti-aging effect compared with single independent treatments on leukemia cells. This study shows potential drug combinations to retard the effects of aging with higher efficacy using innovative machine learning techniques. Public Library of Science 2021-01-28 /pmc/articles/PMC7843016/ /pubmed/33507975 http://dx.doi.org/10.1371/journal.pone.0246106 Text en © 2021 Kim et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Kim, Sun Kyung
Goughnour, Peter C.
Lee, Eui Jin
Kim, Myeong Hyun
Chae, Hee Jin
Yun, Gwang Yeul
Kim, Yi Rang
Choi, Jin Woo
Identification of drug combinations on the basis of machine learning to maximize anti-aging effects
title Identification of drug combinations on the basis of machine learning to maximize anti-aging effects
title_full Identification of drug combinations on the basis of machine learning to maximize anti-aging effects
title_fullStr Identification of drug combinations on the basis of machine learning to maximize anti-aging effects
title_full_unstemmed Identification of drug combinations on the basis of machine learning to maximize anti-aging effects
title_short Identification of drug combinations on the basis of machine learning to maximize anti-aging effects
title_sort identification of drug combinations on the basis of machine learning to maximize anti-aging effects
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7843016/
https://www.ncbi.nlm.nih.gov/pubmed/33507975
http://dx.doi.org/10.1371/journal.pone.0246106
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