Cargando…
Identification of drug combinations on the basis of machine learning to maximize anti-aging effects
Aging is a multifactorial process that involves numerous genetic changes, so identifying anti-aging agents is quite challenging. Age-associated genetic factors must be better understood to search appropriately for anti-aging agents. We utilized an aging-related gene expression pattern-trained machin...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7843016/ https://www.ncbi.nlm.nih.gov/pubmed/33507975 http://dx.doi.org/10.1371/journal.pone.0246106 |
_version_ | 1783644060140961792 |
---|---|
author | Kim, Sun Kyung Goughnour, Peter C. Lee, Eui Jin Kim, Myeong Hyun Chae, Hee Jin Yun, Gwang Yeul Kim, Yi Rang Choi, Jin Woo |
author_facet | Kim, Sun Kyung Goughnour, Peter C. Lee, Eui Jin Kim, Myeong Hyun Chae, Hee Jin Yun, Gwang Yeul Kim, Yi Rang Choi, Jin Woo |
author_sort | Kim, Sun Kyung |
collection | PubMed |
description | Aging is a multifactorial process that involves numerous genetic changes, so identifying anti-aging agents is quite challenging. Age-associated genetic factors must be better understood to search appropriately for anti-aging agents. We utilized an aging-related gene expression pattern-trained machine learning system that can implement reversible changes in aging by linking combinatory drugs. In silico gene expression pattern-based drug repositioning strategies, such as connectivity map, have been developed as a method for unique drug discovery. However, these strategies have limitations such as lists that differ for input and drug-inducing genes or constraints to compare experimental cell lines to target diseases. To address this issue and improve the prediction success rate, we modified the original version of expression profiles with a stepwise-filtered method. We utilized a machine learning system called deep-neural network (DNN). Here we report that combinational drug pairs using differential expressed genes (DEG) had a more enhanced anti-aging effect compared with single independent treatments on leukemia cells. This study shows potential drug combinations to retard the effects of aging with higher efficacy using innovative machine learning techniques. |
format | Online Article Text |
id | pubmed-7843016 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-78430162021-02-04 Identification of drug combinations on the basis of machine learning to maximize anti-aging effects Kim, Sun Kyung Goughnour, Peter C. Lee, Eui Jin Kim, Myeong Hyun Chae, Hee Jin Yun, Gwang Yeul Kim, Yi Rang Choi, Jin Woo PLoS One Research Article Aging is a multifactorial process that involves numerous genetic changes, so identifying anti-aging agents is quite challenging. Age-associated genetic factors must be better understood to search appropriately for anti-aging agents. We utilized an aging-related gene expression pattern-trained machine learning system that can implement reversible changes in aging by linking combinatory drugs. In silico gene expression pattern-based drug repositioning strategies, such as connectivity map, have been developed as a method for unique drug discovery. However, these strategies have limitations such as lists that differ for input and drug-inducing genes or constraints to compare experimental cell lines to target diseases. To address this issue and improve the prediction success rate, we modified the original version of expression profiles with a stepwise-filtered method. We utilized a machine learning system called deep-neural network (DNN). Here we report that combinational drug pairs using differential expressed genes (DEG) had a more enhanced anti-aging effect compared with single independent treatments on leukemia cells. This study shows potential drug combinations to retard the effects of aging with higher efficacy using innovative machine learning techniques. Public Library of Science 2021-01-28 /pmc/articles/PMC7843016/ /pubmed/33507975 http://dx.doi.org/10.1371/journal.pone.0246106 Text en © 2021 Kim et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Kim, Sun Kyung Goughnour, Peter C. Lee, Eui Jin Kim, Myeong Hyun Chae, Hee Jin Yun, Gwang Yeul Kim, Yi Rang Choi, Jin Woo Identification of drug combinations on the basis of machine learning to maximize anti-aging effects |
title | Identification of drug combinations on the basis of machine learning to maximize anti-aging effects |
title_full | Identification of drug combinations on the basis of machine learning to maximize anti-aging effects |
title_fullStr | Identification of drug combinations on the basis of machine learning to maximize anti-aging effects |
title_full_unstemmed | Identification of drug combinations on the basis of machine learning to maximize anti-aging effects |
title_short | Identification of drug combinations on the basis of machine learning to maximize anti-aging effects |
title_sort | identification of drug combinations on the basis of machine learning to maximize anti-aging effects |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7843016/ https://www.ncbi.nlm.nih.gov/pubmed/33507975 http://dx.doi.org/10.1371/journal.pone.0246106 |
work_keys_str_mv | AT kimsunkyung identificationofdrugcombinationsonthebasisofmachinelearningtomaximizeantiagingeffects AT goughnourpeterc identificationofdrugcombinationsonthebasisofmachinelearningtomaximizeantiagingeffects AT leeeuijin identificationofdrugcombinationsonthebasisofmachinelearningtomaximizeantiagingeffects AT kimmyeonghyun identificationofdrugcombinationsonthebasisofmachinelearningtomaximizeantiagingeffects AT chaeheejin identificationofdrugcombinationsonthebasisofmachinelearningtomaximizeantiagingeffects AT yungwangyeul identificationofdrugcombinationsonthebasisofmachinelearningtomaximizeantiagingeffects AT kimyirang identificationofdrugcombinationsonthebasisofmachinelearningtomaximizeantiagingeffects AT choijinwoo identificationofdrugcombinationsonthebasisofmachinelearningtomaximizeantiagingeffects |