Cargando…

Spatial constrains and information content of sub-genomic regions of the human genome

Complexity metrics and machine learning (ML) models have been utilized to analyze the lengths of segmental genomic entities of DNA sequences (exonic, intronic, intergenic, repeat, unique) with the purpose to ask questions regarding the segmental organization of the human genome within the size distr...

Descripción completa

Detalles Bibliográficos
Autores principales:	Karakatsanis, Leonidas P., Pavlos, Evgenios G., Tsoulouhas, George, Stamokostas, Georgios L., Mosbruger, Timothy, Duke, Jamie L., Pavlos, George P., Monos, Dimitri S.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Elsevier 2021
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7843455/ https://www.ncbi.nlm.nih.gov/pubmed/33554061 http://dx.doi.org/10.1016/j.isci.2021.102048

Ejemplares similares

Non-Extensive Statistical Analysis of Energetic Particle Flux Enhancements Caused by the Interplanetary Coronal Mass Ejection-Heliospheric Current Sheet Interaction
por: Pavlos, Evgenios G., et al.
Publicado: (2019)

Genomic characterization of MICA gene using multiple next generation sequencing platforms: A validation study
por: Zou, Yizhou, et al.
Publicado: (2020)

Utilizing nanopore sequencing technology for the rapid and comprehensive characterization of eleven HLA loci; addressing the need for deceased donor expedited HLA typing
por: Mosbruger, Timothy L., et al.
Publicado: (2020)

A combination of HLA-DP α and β chain polymorphisms paired with a SNP in the DPB1 3’ UTR region, denoting expression levels, are associated with atopic dermatitis
por: Margolis, David J., et al.
Publicado: (2023)

SNP-specific extraction of haplotype-resolved targeted genomic regions
por: Dapprich, Johannes, et al.
Publicado: (2008)

The Evolutionary Value of Recombination Is Constrained by Genome Modularity
por: Martin, Darren P, et al.
Publicado: (2005)

Audio-Visual Temporal Recalibration Can be Constrained by Content Cues Regardless of Spatial Overlap
por: Roseboom, Warrick, et al.
Publicado: (2013)

Spatially coordinated replication and minimization of expression noise constrain three-dimensional organization of yeast genome
por: Singh, Arashdeep, et al.
Publicado: (2016)

Spatially constrained tumour growth affects the patterns of clonal selection and neutral drift in cancer genomic data
por: Chkhaidze, Ketevan, et al.
Publicado: (2019)

Translational Genomics in Neurocritical Care: a Review
por: Myserlis, Pavlos, et al.
Publicado: (2020)

Constrained optimization and Lagrange multiplier methods
por: Bertsekas, Dimitri P, et al.
Publicado: (1982)

Balancing selection on genomic deletion polymorphisms in humans
por: Aqil, Alber, et al.
Publicado: (2023)

On Estimation of Genome Composition in Genetically Admixed Individuals Using Constrained Genomic Regression
por: Boerner, Vinzent, et al.
Publicado: (2018)

The ecology of palm genomes: repeat‐associated genome size expansion is constrained by aridity
por: Schley, Rowan J., et al.
Publicado: (2022)

Constrained distance transforms for spatial atlas registration
por: Hill, Bill, et al.
Publicado: (2015)

SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes
por: Pavlidis, Pavlos, et al.
Publicado: (2013)

The era of big data: Genome-scale modelling meets machine learning
por: Antonakoudis, Athanasios, et al.
Publicado: (2020)

Genome-wide scans for selective sweeps using convolutional neural networks
por: Zhao, Hanqing, et al.
Publicado: (2023)

Population Genomics Insights into the First Wave of COVID-19
por: Vasilarou, Maria, et al.
Publicado: (2021)

A Higher Tidal Volume May Be Used for Athletes according to Measured FVC
por: Myrianthefs, Pavlos, et al.
Publicado: (2013)

Genome scans for selection and introgression based on k‐nearest neighbour techniques
por: Pfeifer, Bastian, et al.
Publicado: (2020)

SMITH: spatially constrained stochastic model for simulation of intra-tumour heterogeneity
por: Streck, Adam, et al.
Publicado: (2023)

Single-stranded genomic architecture constrains optimal codon usage
por: Cardinale, Daniel J., et al.
Publicado: (2011)

Minimal genome encoding proteins with constrained amino acid repertoire
por: Tsoy, Olga, et al.
Publicado: (2013)

Evolutionary rescue by compensatory mutations is constrained by genomic and environmental backgrounds
por: Filteau, Marie, et al.
Publicado: (2015)

Constraining the timing of whole genome duplication in plant evolutionary history
por: Clark, James W., et al.
Publicado: (2017)

Genomic architecture constrained placental mammal X Chromosome evolution
por: Brashear, Wesley A., et al.
Publicado: (2021)

Mapping the Constrained Coding Regions in the Human Genome to Their Corresponding Proteins
por: Hasenahuer, Marcia A., et al.
Publicado: (2023)

Parameter inference for enzyme and temperature constrained genome-scale models
por: Pettersen, Jakob Peder, et al.
Publicado: (2023)

Spatial competition constrains resistance to targeted cancer therapy
por: Bacevic, Katarina, et al.
Publicado: (2017)

Structural and Content Diversity of Mitochondrial Genome in Beet: A Comparative Genomic Analysis
por: Darracq, A., et al.
Publicado: (2011)

Callosal Angle Sub-Score of the Radscale in Patients with Idiopathic Normal Pressure Hydrocephalus Is Associated with Positive Tap Test Response
por: Pyrgelis, Efstratios-Stylianos, et al.
Publicado: (2022)

A Deep Learning Approach to Aspect-Based Sentiment Prediction
por: Alexandridis, Georgios, et al.
Publicado: (2020)

Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model
por: Gürsoy, Gamze, et al.
Publicado: (2017)

The pathogenic p.Gln319Ter variant is not causing congenital adrenal hyperplasia when inherited in one of the duplicated CYP21A2 genes
por: Fanis, Pavlos, et al.
Publicado: (2023)

Springtime photoinhibition constrains regeneration of forest floor seedlings of Abies sachalinensis after a removal of canopy trees during winter
por: Kitao, Mitsutoshi, et al.
Publicado: (2018)

The Evolution and Functional Impact of Human Deletion Variants Shared with Archaic Hominin Genomes
por: Lin, Yen-Lung, et al.
Publicado: (2015)

Efficient real-time selective genome sequencing on resource-constrained devices
por: Shih, Po Jui, et al.
Publicado: (2023)

Wave Speed in Excitable Random Networks with Spatially Constrained Connections
por: Vladimirov, Nikita, et al.
Publicado: (2011)

Rule-based spatial modeling with diffusing, geometrically constrained molecules
por: Gruenert, Gerd, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_mgmdt2ndu6be17fb25jdkr0jnu