Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies

In total, 12 quinolone-resistant Escherichia coli (QREC) strains containing qnrS1 were submitted to long-read sequencing using a FLO-MIN106 flow cell on a MinION device. The long reads were assembled with short reads (Illumina) and analyzed using the MOB-suite pipeline. Six of these QREC genome sequ...

Descripción completa

Detalles Bibliográficos
Autores principales: Kaspersen, Håkon, Haverkamp, Thomas H. A., Ilag, Hanna Karin, Øines, Øivind, Sekse, Camilla, Slettemeås, Jannice Schau
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2021
Materias:
Genome Sequences
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7844070/
https://www.ncbi.nlm.nih.gov/pubmed/33509985
http://dx.doi.org/10.1128/MRA.01190-20
_version_ 1783644263401127936
author Kaspersen, Håkon
Haverkamp, Thomas H. A.
Ilag, Hanna Karin
Øines, Øivind
Sekse, Camilla
Slettemeås, Jannice Schau
author_facet Kaspersen, Håkon
Haverkamp, Thomas H. A.
Ilag, Hanna Karin
Øines, Øivind
Sekse, Camilla
Slettemeås, Jannice Schau
author_sort Kaspersen, Håkon
collection PubMed
description In total, 12 quinolone-resistant Escherichia coli (QREC) strains containing qnrS1 were submitted to long-read sequencing using a FLO-MIN106 flow cell on a MinION device. The long reads were assembled with short reads (Illumina) and analyzed using the MOB-suite pipeline. Six of these QREC genome sequences were closed after hybrid assembly.
format Online
Article
Text
id pubmed-7844070
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher American Society for Microbiology
record_format MEDLINE/PubMed
spelling pubmed-78440702021-02-05 Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies Kaspersen, Håkon Haverkamp, Thomas H. A. Ilag, Hanna Karin Øines, Øivind Sekse, Camilla Slettemeås, Jannice Schau Microbiol Resour Announc Genome Sequences In total, 12 quinolone-resistant Escherichia coli (QREC) strains containing qnrS1 were submitted to long-read sequencing using a FLO-MIN106 flow cell on a MinION device. The long reads were assembled with short reads (Illumina) and analyzed using the MOB-suite pipeline. Six of these QREC genome sequences were closed after hybrid assembly. American Society for Microbiology 2021-01-28 /pmc/articles/PMC7844070/ /pubmed/33509985 http://dx.doi.org/10.1128/MRA.01190-20 Text en Copyright © 2021 Kaspersen et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Genome Sequences
Kaspersen, Håkon
Haverkamp, Thomas H. A.
Ilag, Hanna Karin
Øines, Øivind
Sekse, Camilla
Slettemeås, Jannice Schau
Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies
title Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies
title_full Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies
title_fullStr Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies
title_full_unstemmed Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies
title_short Complete Genome Sequences of 12 Quinolone-Resistant Escherichia coli Strains Containing qnrS1 Based on Hybrid Assemblies
title_sort complete genome sequences of 12 quinolone-resistant escherichia coli strains containing qnrs1 based on hybrid assemblies
topic Genome Sequences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7844070/
https://www.ncbi.nlm.nih.gov/pubmed/33509985
http://dx.doi.org/10.1128/MRA.01190-20
work_keys_str_mv AT kaspersenhakon completegenomesequencesof12quinoloneresistantescherichiacolistrainscontainingqnrs1basedonhybridassemblies
AT haverkampthomasha completegenomesequencesof12quinoloneresistantescherichiacolistrainscontainingqnrs1basedonhybridassemblies
AT ilaghannakarin completegenomesequencesof12quinoloneresistantescherichiacolistrainscontainingqnrs1basedonhybridassemblies
AT øinesøivind completegenomesequencesof12quinoloneresistantescherichiacolistrainscontainingqnrs1basedonhybridassemblies
AT seksecamilla completegenomesequencesof12quinoloneresistantescherichiacolistrainscontainingqnrs1basedonhybridassemblies
AT slettemeasjanniceschau completegenomesequencesof12quinoloneresistantescherichiacolistrainscontainingqnrs1basedonhybridassemblies

Ejemplares similares