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COVID-19 outbreak in Wuhan demonstrates the limitations of publicly available case numbers for epidemiological modeling

Epidemiological models are widely used to analyze the spread of diseases such as the global COVID-19 pandemic caused by SARS-CoV-2. However, all models are based on simplifying assumptions and often on sparse data. This limits the reliability of parameter estimates and predictions. In this manuscrip...

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Autores principales: Raimúndez, Elba, Dudkin, Erika, Vanhoefer, Jakob, Alamoudi, Emad, Merkt, Simon, Fuhrmann, Lara, Bai, Fan, Hasenauer, Jan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Authors. Published by Elsevier B.V. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7845523/
https://www.ncbi.nlm.nih.gov/pubmed/33556763
http://dx.doi.org/10.1016/j.epidem.2021.100439
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author Raimúndez, Elba
Dudkin, Erika
Vanhoefer, Jakob
Alamoudi, Emad
Merkt, Simon
Fuhrmann, Lara
Bai, Fan
Hasenauer, Jan
author_facet Raimúndez, Elba
Dudkin, Erika
Vanhoefer, Jakob
Alamoudi, Emad
Merkt, Simon
Fuhrmann, Lara
Bai, Fan
Hasenauer, Jan
author_sort Raimúndez, Elba
collection PubMed
description Epidemiological models are widely used to analyze the spread of diseases such as the global COVID-19 pandemic caused by SARS-CoV-2. However, all models are based on simplifying assumptions and often on sparse data. This limits the reliability of parameter estimates and predictions. In this manuscript, we demonstrate the relevance of these limitations and the pitfalls associated with the use of overly simplistic models. We considered the data for the early phase of the COVID-19 outbreak in Wuhan, China, as an example, and perform parameter estimation, uncertainty analysis and model selection for a range of established epidemiological models. Amongst others, we employ Markov chain Monte Carlo sampling, parameter and prediction profile calculation algorithms. Our results show that parameter estimates and predictions obtained for several established models on the basis of reported case numbers can be subject to substantial uncertainty. More importantly, estimates were often unrealistic and the confidence/credibility intervals did not cover plausible values of critical parameters obtained using different approaches. These findings suggest, amongst others, that standard compartmental models can be overly simplistic and that the reported case numbers provide often insufficient information for obtaining reliable and realistic parameter values, and for forecasting the evolution of epidemics.
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spelling pubmed-78455232021-02-01 COVID-19 outbreak in Wuhan demonstrates the limitations of publicly available case numbers for epidemiological modeling Raimúndez, Elba Dudkin, Erika Vanhoefer, Jakob Alamoudi, Emad Merkt, Simon Fuhrmann, Lara Bai, Fan Hasenauer, Jan Epidemics Article Epidemiological models are widely used to analyze the spread of diseases such as the global COVID-19 pandemic caused by SARS-CoV-2. However, all models are based on simplifying assumptions and often on sparse data. This limits the reliability of parameter estimates and predictions. In this manuscript, we demonstrate the relevance of these limitations and the pitfalls associated with the use of overly simplistic models. We considered the data for the early phase of the COVID-19 outbreak in Wuhan, China, as an example, and perform parameter estimation, uncertainty analysis and model selection for a range of established epidemiological models. Amongst others, we employ Markov chain Monte Carlo sampling, parameter and prediction profile calculation algorithms. Our results show that parameter estimates and predictions obtained for several established models on the basis of reported case numbers can be subject to substantial uncertainty. More importantly, estimates were often unrealistic and the confidence/credibility intervals did not cover plausible values of critical parameters obtained using different approaches. These findings suggest, amongst others, that standard compartmental models can be overly simplistic and that the reported case numbers provide often insufficient information for obtaining reliable and realistic parameter values, and for forecasting the evolution of epidemics. The Authors. Published by Elsevier B.V. 2021-03 2021-01-29 /pmc/articles/PMC7845523/ /pubmed/33556763 http://dx.doi.org/10.1016/j.epidem.2021.100439 Text en © 2021 The Authors Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Raimúndez, Elba
Dudkin, Erika
Vanhoefer, Jakob
Alamoudi, Emad
Merkt, Simon
Fuhrmann, Lara
Bai, Fan
Hasenauer, Jan
COVID-19 outbreak in Wuhan demonstrates the limitations of publicly available case numbers for epidemiological modeling
title COVID-19 outbreak in Wuhan demonstrates the limitations of publicly available case numbers for epidemiological modeling
title_full COVID-19 outbreak in Wuhan demonstrates the limitations of publicly available case numbers for epidemiological modeling
title_fullStr COVID-19 outbreak in Wuhan demonstrates the limitations of publicly available case numbers for epidemiological modeling
title_full_unstemmed COVID-19 outbreak in Wuhan demonstrates the limitations of publicly available case numbers for epidemiological modeling
title_short COVID-19 outbreak in Wuhan demonstrates the limitations of publicly available case numbers for epidemiological modeling
title_sort covid-19 outbreak in wuhan demonstrates the limitations of publicly available case numbers for epidemiological modeling
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7845523/
https://www.ncbi.nlm.nih.gov/pubmed/33556763
http://dx.doi.org/10.1016/j.epidem.2021.100439
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