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Deep COVID DeteCT: an international experience on COVID-19 lung detection and prognosis using chest CT

The Coronavirus disease 2019 (COVID-19) presents open questions in how we clinically diagnose and assess disease course. Recently, chest computed tomography (CT) has shown utility for COVID-19 diagnosis. In this study, we developed Deep COVID DeteCT (DCD), a deep learning convolutional neural networ...

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Autores principales: Lee, Edward H., Zheng, Jimmy, Colak, Errol, Mohammadzadeh, Maryam, Houshmand, Golnaz, Bevins, Nicholas, Kitamura, Felipe, Altinmakas, Emre, Reis, Eduardo Pontes, Kim, Jae-Kwang, Klochko, Chad, Han, Michelle, Moradian, Sadegh, Mohammadzadeh, Ali, Sharifian, Hashem, Hashemi, Hassan, Firouznia, Kavous, Ghanaati, Hossien, Gity, Masoumeh, Doğan, Hakan, Salehinejad, Hojjat, Alves, Henrique, Seekins, Jayne, Abdala, Nitamar, Atasoy, Çetin, Pouraliakbar, Hamidreza, Maleki, Majid, Wong, S. Simon, Yeom, Kristen W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7846563/
https://www.ncbi.nlm.nih.gov/pubmed/33514852
http://dx.doi.org/10.1038/s41746-020-00369-1
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author Lee, Edward H.
Zheng, Jimmy
Colak, Errol
Mohammadzadeh, Maryam
Houshmand, Golnaz
Bevins, Nicholas
Kitamura, Felipe
Altinmakas, Emre
Reis, Eduardo Pontes
Kim, Jae-Kwang
Klochko, Chad
Han, Michelle
Moradian, Sadegh
Mohammadzadeh, Ali
Sharifian, Hashem
Hashemi, Hassan
Firouznia, Kavous
Ghanaati, Hossien
Gity, Masoumeh
Doğan, Hakan
Salehinejad, Hojjat
Alves, Henrique
Seekins, Jayne
Abdala, Nitamar
Atasoy, Çetin
Pouraliakbar, Hamidreza
Maleki, Majid
Wong, S. Simon
Yeom, Kristen W.
author_facet Lee, Edward H.
Zheng, Jimmy
Colak, Errol
Mohammadzadeh, Maryam
Houshmand, Golnaz
Bevins, Nicholas
Kitamura, Felipe
Altinmakas, Emre
Reis, Eduardo Pontes
Kim, Jae-Kwang
Klochko, Chad
Han, Michelle
Moradian, Sadegh
Mohammadzadeh, Ali
Sharifian, Hashem
Hashemi, Hassan
Firouznia, Kavous
Ghanaati, Hossien
Gity, Masoumeh
Doğan, Hakan
Salehinejad, Hojjat
Alves, Henrique
Seekins, Jayne
Abdala, Nitamar
Atasoy, Çetin
Pouraliakbar, Hamidreza
Maleki, Majid
Wong, S. Simon
Yeom, Kristen W.
author_sort Lee, Edward H.
collection PubMed
description The Coronavirus disease 2019 (COVID-19) presents open questions in how we clinically diagnose and assess disease course. Recently, chest computed tomography (CT) has shown utility for COVID-19 diagnosis. In this study, we developed Deep COVID DeteCT (DCD), a deep learning convolutional neural network (CNN) that uses the entire chest CT volume to automatically predict COVID-19 (COVID+) from non-COVID-19 (COVID−) pneumonia and normal controls. We discuss training strategies and differences in performance across 13 international institutions and 8 countries. The inclusion of non-China sites in training significantly improved classification performance with area under the curve (AUCs) and accuracies above 0.8 on most test sites. Furthermore, using available follow-up scans, we investigate methods to track patient disease course and predict prognosis.
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spelling pubmed-78465632021-02-11 Deep COVID DeteCT: an international experience on COVID-19 lung detection and prognosis using chest CT Lee, Edward H. Zheng, Jimmy Colak, Errol Mohammadzadeh, Maryam Houshmand, Golnaz Bevins, Nicholas Kitamura, Felipe Altinmakas, Emre Reis, Eduardo Pontes Kim, Jae-Kwang Klochko, Chad Han, Michelle Moradian, Sadegh Mohammadzadeh, Ali Sharifian, Hashem Hashemi, Hassan Firouznia, Kavous Ghanaati, Hossien Gity, Masoumeh Doğan, Hakan Salehinejad, Hojjat Alves, Henrique Seekins, Jayne Abdala, Nitamar Atasoy, Çetin Pouraliakbar, Hamidreza Maleki, Majid Wong, S. Simon Yeom, Kristen W. NPJ Digit Med Article The Coronavirus disease 2019 (COVID-19) presents open questions in how we clinically diagnose and assess disease course. Recently, chest computed tomography (CT) has shown utility for COVID-19 diagnosis. In this study, we developed Deep COVID DeteCT (DCD), a deep learning convolutional neural network (CNN) that uses the entire chest CT volume to automatically predict COVID-19 (COVID+) from non-COVID-19 (COVID−) pneumonia and normal controls. We discuss training strategies and differences in performance across 13 international institutions and 8 countries. The inclusion of non-China sites in training significantly improved classification performance with area under the curve (AUCs) and accuracies above 0.8 on most test sites. Furthermore, using available follow-up scans, we investigate methods to track patient disease course and predict prognosis. Nature Publishing Group UK 2021-01-29 /pmc/articles/PMC7846563/ /pubmed/33514852 http://dx.doi.org/10.1038/s41746-020-00369-1 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Lee, Edward H.
Zheng, Jimmy
Colak, Errol
Mohammadzadeh, Maryam
Houshmand, Golnaz
Bevins, Nicholas
Kitamura, Felipe
Altinmakas, Emre
Reis, Eduardo Pontes
Kim, Jae-Kwang
Klochko, Chad
Han, Michelle
Moradian, Sadegh
Mohammadzadeh, Ali
Sharifian, Hashem
Hashemi, Hassan
Firouznia, Kavous
Ghanaati, Hossien
Gity, Masoumeh
Doğan, Hakan
Salehinejad, Hojjat
Alves, Henrique
Seekins, Jayne
Abdala, Nitamar
Atasoy, Çetin
Pouraliakbar, Hamidreza
Maleki, Majid
Wong, S. Simon
Yeom, Kristen W.
Deep COVID DeteCT: an international experience on COVID-19 lung detection and prognosis using chest CT
title Deep COVID DeteCT: an international experience on COVID-19 lung detection and prognosis using chest CT
title_full Deep COVID DeteCT: an international experience on COVID-19 lung detection and prognosis using chest CT
title_fullStr Deep COVID DeteCT: an international experience on COVID-19 lung detection and prognosis using chest CT
title_full_unstemmed Deep COVID DeteCT: an international experience on COVID-19 lung detection and prognosis using chest CT
title_short Deep COVID DeteCT: an international experience on COVID-19 lung detection and prognosis using chest CT
title_sort deep covid detect: an international experience on covid-19 lung detection and prognosis using chest ct
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7846563/
https://www.ncbi.nlm.nih.gov/pubmed/33514852
http://dx.doi.org/10.1038/s41746-020-00369-1
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