Cargando…

Detection of SARS-CoV-2 from patient fecal samples by whole genome sequencing

BACKGROUND: SARS-CoV-2 has been detected not only in respiratory secretions, but also in stool collections. Here were sought to identify SARS-CoV-2 by enrichment next-generation sequencing (NGS) from fecal samples, and to utilize whole genome analysis to characterize SARS-CoV-2 mutational variations...

Descripción completa

Detalles Bibliográficos
Autores principales:	Papoutsis, Andreas, Borody, Thomas, Dolai, Siba, Daniels, Jordan, Steinberg, Skylar, Barrows, Brad, Hazan, Sabine
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2021
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7846909/ https://www.ncbi.nlm.nih.gov/pubmed/33516247 http://dx.doi.org/10.1186/s13099-021-00398-5

Ejemplares similares

Successful Bacterial Engraftment Identified by Next-Generation Sequencing Predicts Success of Fecal Microbiota Transplant for Clostridioides difficile
por: Hazan, Sabine, et al.
Publicado: (2021)

Lost microbes of COVID-19: Bifidobacterium, Faecalibacterium depletion and decreased microbiome diversity associated with SARS-CoV-2 infection severity
por: Hazan, Sabine, et al.
Publicado: (2022)

Fr580 THE MICROBIOME AND SARS-COV-2: DAVID VERSUS A TINY GOLIATH
por: Hazan, Sabine, et al.
Publicado: (2021)

Shotgun Metagenomic Sequencing Identifies Dysbiosis in Triplet Sibling with Gastrointestinal Symptoms and ASD
por: Hazan, Sabine, et al.
Publicado: (2020)

Effectiveness of ivermectin-based multidrug therapy in severely hypoxic, ambulatory COVID-19 patients
por: Hazan, Sabine, et al.
Publicado: (2022)

Evaluation of SARS-CoV-2 viral RNA in fecal samples
por: Mesoraca, Alvaro, et al.
Publicado: (2020)

Rapid improvement in Alzheimer’s disease symptoms following fecal microbiota transplantation: a case report
por: Hazan, Sabine
Publicado: (2020)

Pre-Existing Microbiome Signature in a SARS-CoV-2 Discordant Family
por: Hazan, Sabine
Publicado: (2022)

Fecal Microbiota Transplantation: Indications, Methods, Evidence, and Future Directions
por: Borody, Thomas J., et al.
Publicado: (2013)

Fecal Microbiota Transplantation: Expanding Horizons for Clostridium difficile Infections and Beyond
por: Borody, Thomas J., et al.
Publicado: (2015)

Longitudinal sampling sheds light on SARS-CoV-2 fecal shedding dynamics
por: Coryell, Michael P., et al.
Publicado: (2022)

Comparison of Methods To Collect Fecal Samples for Microbiome Studies Using Whole-Genome Shotgun Metagenomic Sequencing
por: Byrd, Doratha A., et al.
Publicado: (2020)

Encyclopedia of fecal microbiota transplantation: a review of effectiveness in the treatment of 85 diseases
por: Wang, Yun, et al.
Publicado: (2022)

Detection of SARS-CoV-2 in fecal samples with different pretreatment methods and PCR kits
por: Cao, Ranran, et al.
Publicado: (2021)

Demographic and clinical characteristics associated with detection of SARS CoV-2 RNA in fecal samples
por: Haider, M., et al.
Publicado: (2023)

Fecal Microbiota Transplantation Reduces Pathology and Improves Cognition in a Mouse Model of Alzheimer’s Disease
por: Elangovan, Shalini, et al.
Publicado: (2022)

MINERVA: A Facile Strategy for SARS-CoV-2 Whole-Genome Deep Sequencing of Clinical Samples
por: Chen, Chen, et al.
Publicado: (2020)

SARS-CoV-2 in infant urine and fecal samples after in utero COVID-19 exposure
por: Boateng, Jeffery O., et al.
Publicado: (2021)

Drivers and determinants of strain dynamics following fecal microbiota transplantation
por: Schmidt, Thomas S. B., et al.
Publicado: (2022)

Intensity of sample processing methods impacts wastewater SARS-CoV-2 whole genome amplicon sequencing outcomes
por: Feng, Shuchen, et al.
Publicado: (2023)

Detection of SARS-CoV-2 in Fecal Samples From Patients With Asymptomatic and Mild COVID-19 in Korea
por: Park, Soo-kyung, et al.
Publicado: (2021)

A benchmarking study of SARS-CoV-2 whole-genome sequencing protocols using COVID-19 patient samples
por: Liu, Tiantian, et al.
Publicado: (2021)

Alternate primers for whole-genome SARS-CoV-2 sequencing
por: Cotten, Matthew, et al.
Publicado: (2021)

Proficiency testing for SARS-CoV-2 whole genome sequencing
por: Lau, Katherine A., et al.
Publicado: (2022)

Fecal–Oral Transmission of SARS-COV-2: Practical Implications
por: Bonato, Giulia, et al.
Publicado: (2020)

Long-Term Bacterial and Fungal Dynamics following Oral Lyophilized Fecal Microbiota Transplantation in Clostridioides difficile Infection
por: Haifer, Craig, et al.
Publicado: (2021)

Protocol for the isolation, sequencing, and analysis of the gut phageome from human fecal samples
por: Bikel, Shirley, et al.
Publicado: (2022)

Exploration and retrieval of whole-metagenome sequencing samples
por: Seth, Sohan, et al.
Publicado: (2014)

Whole-Genome Sequence of SARS-CoV-2 Isolate Siena-1/2020
por: Cusi, Maria Grazia, et al.
Publicado: (2020)

Whole-Genome Sequences of SARS-CoV-2 Isolates from Ethiopian Patients
por: Alemayehu, Dawit Hailu, et al.
Publicado: (2021)

Bioinformatic analysis of the whole genome sequences of SARS-CoV-2 from Indonesia
por: Ulfah, Maria, et al.
Publicado: (2021)

Whole-Genome Sequences of SARS-CoV-2 Isolates from the Dominican Republic
por: Paulino-Ramirez, R., et al.
Publicado: (2021)

Whole-Genome Sequencing of SARS-CoV-2 from Quarantine Hotel Outbreak
por: Leong, Lex E.X., et al.
Publicado: (2021)

The Irish National SARS-CoV-2 Whole Genome Sequencing Surveillance Programme
por: Brehony, C, et al.
Publicado: (2023)

Newcastle Disease Virus as a Vaccine Vector for SARS-CoV-2
por: Shirvani, Edris, et al.
Publicado: (2020)

Whole-Genome Draft Sequences of Six Commensal Fecal and Six Mastitis-Associated Escherichia coli Strains of Bovine Origin
por: Leimbach, Andreas, et al.
Publicado: (2016)

SARS-CoV-2 Detection in Fecal Sample from a Patient with Typical Findings of COVID-19 Pneumonia on CT but Negative to Multiple SARS-CoV-2 RT-PCR Tests on Oropharyngeal and Nasopharyngeal Swab Samples
por: Brogna, Barbara, et al.
Publicado: (2021)

Whole-genome sequencing & mutational analysis of SARS-CoV-2 from patients’ faecal samples reveal the possible role in faecal-oral transmission
por: Lavania, Mallika, et al.
Publicado: (2022)

368. Performance Characteristics of Sequencing Assays for Identification of the SARS-CoV-2 Viral Genome
por: Antaki, Danny, et al.
Publicado: (2021)

Fecal Shedding of SARS CoV-2: Implications for Disease Spread and Quarantine
por: Meena, Jitendra, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_s165jqamjgn57m0qp7qd8g4n53