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Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV)

The National Center for Biotechnology Information (NCBI) is an archive providing free access to a wide range and large volume of biological sequence data and literature. Staff scientists at NCBI analyze user-submitted data in the archive, producing gene and SNP annotation and generating sequence ali...

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Autores principales: Rangwala, Sanjida H., Kuznetsov, Anatoliy, Ananiev, Victor, Asztalos, Andrea, Borodin, Evgeny, Evgeniev, Vladislav, Joukov, Victor, Lotov, Vadim, Pannu, Ravinder, Rudnev, Dmitry, Shkeda, Andrew, Weitz, Eric M., Schneider, Valerie A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7849379/
https://www.ncbi.nlm.nih.gov/pubmed/33239395
http://dx.doi.org/10.1101/gr.266932.120
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author Rangwala, Sanjida H.
Kuznetsov, Anatoliy
Ananiev, Victor
Asztalos, Andrea
Borodin, Evgeny
Evgeniev, Vladislav
Joukov, Victor
Lotov, Vadim
Pannu, Ravinder
Rudnev, Dmitry
Shkeda, Andrew
Weitz, Eric M.
Schneider, Valerie A.
author_facet Rangwala, Sanjida H.
Kuznetsov, Anatoliy
Ananiev, Victor
Asztalos, Andrea
Borodin, Evgeny
Evgeniev, Vladislav
Joukov, Victor
Lotov, Vadim
Pannu, Ravinder
Rudnev, Dmitry
Shkeda, Andrew
Weitz, Eric M.
Schneider, Valerie A.
author_sort Rangwala, Sanjida H.
collection PubMed
description The National Center for Biotechnology Information (NCBI) is an archive providing free access to a wide range and large volume of biological sequence data and literature. Staff scientists at NCBI analyze user-submitted data in the archive, producing gene and SNP annotation and generating sequence alignment tools. NCBI's flagship genome browser, Genome Data Viewer (GDV), displays our in-house RefSeq annotation; is integrated with other NCBI resources such as Gene, dbGaP, and BLAST; and provides a platform for customized analysis and visualization. Here, we describe how members of the biomedical research community can use GDV and the related NCBI Sequence Viewer (SV) to access, analyze, and disseminate NCBI and custom biomedical sequence data. In addition, we report how users can add SV to their own web pages to create a custom graphical sequence display without the need for infrastructure investments or back-end deployments.
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spelling pubmed-78493792021-07-01 Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV) Rangwala, Sanjida H. Kuznetsov, Anatoliy Ananiev, Victor Asztalos, Andrea Borodin, Evgeny Evgeniev, Vladislav Joukov, Victor Lotov, Vadim Pannu, Ravinder Rudnev, Dmitry Shkeda, Andrew Weitz, Eric M. Schneider, Valerie A. Genome Res Resource The National Center for Biotechnology Information (NCBI) is an archive providing free access to a wide range and large volume of biological sequence data and literature. Staff scientists at NCBI analyze user-submitted data in the archive, producing gene and SNP annotation and generating sequence alignment tools. NCBI's flagship genome browser, Genome Data Viewer (GDV), displays our in-house RefSeq annotation; is integrated with other NCBI resources such as Gene, dbGaP, and BLAST; and provides a platform for customized analysis and visualization. Here, we describe how members of the biomedical research community can use GDV and the related NCBI Sequence Viewer (SV) to access, analyze, and disseminate NCBI and custom biomedical sequence data. In addition, we report how users can add SV to their own web pages to create a custom graphical sequence display without the need for infrastructure investments or back-end deployments. Cold Spring Harbor Laboratory Press 2021-01 /pmc/articles/PMC7849379/ /pubmed/33239395 http://dx.doi.org/10.1101/gr.266932.120 Text en Published by Cold Spring Harbor Laboratory Press http://creativecommons.org/licenses/by-nc/4.0/ This is a work of the US Government.
spellingShingle Resource
Rangwala, Sanjida H.
Kuznetsov, Anatoliy
Ananiev, Victor
Asztalos, Andrea
Borodin, Evgeny
Evgeniev, Vladislav
Joukov, Victor
Lotov, Vadim
Pannu, Ravinder
Rudnev, Dmitry
Shkeda, Andrew
Weitz, Eric M.
Schneider, Valerie A.
Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV)
title Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV)
title_full Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV)
title_fullStr Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV)
title_full_unstemmed Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV)
title_short Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV)
title_sort accessing ncbi data using the ncbi sequence viewer and genome data viewer (gdv)
topic Resource
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7849379/
https://www.ncbi.nlm.nih.gov/pubmed/33239395
http://dx.doi.org/10.1101/gr.266932.120
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