Water Microbiota from a Commercial Alfalfa Sprout Crop over 4 Days of Growth

Sprouts have been implicated in numerous foodborne illness outbreaks. To better understand baseline microbial profiles of irrigation water and subsequent spent irrigation water of alfalfa sprouts, DNA from water was extracted, sequenced, and annotated with CosmosID and a custom pipeline to provide b...

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Detalles Bibliográficos
Autores principales: Reed, Elizabeth, Sanderson, Robert, Sanderson, Barbara, Ramachandran, Padmini, Commichaux, Seth, Brown, Eric, Zheng, Jie, Strain, Errol, Ottesen, Andrea
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2021
Materias:
Omics Data Sets
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7849694/
https://www.ncbi.nlm.nih.gov/pubmed/33446581
http://dx.doi.org/10.1128/MRA.00906-20
Descripción
Sumario:Sprouts have been implicated in numerous foodborne illness outbreaks. To better understand baseline microbial profiles of irrigation water and subsequent spent irrigation water of alfalfa sprouts, DNA from water was extracted, sequenced, and annotated with CosmosID and a custom pipeline to provide bacterial, fungal, protist, and antimicrobial resistance gene profiles.

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