Water Microbiota from a Commercial Alfalfa Sprout Crop over 4 Days of Growth

Sprouts have been implicated in numerous foodborne illness outbreaks. To better understand baseline microbial profiles of irrigation water and subsequent spent irrigation water of alfalfa sprouts, DNA from water was extracted, sequenced, and annotated with CosmosID and a custom pipeline to provide b...

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Detalles Bibliográficos
Autores principales: Reed, Elizabeth, Sanderson, Robert, Sanderson, Barbara, Ramachandran, Padmini, Commichaux, Seth, Brown, Eric, Zheng, Jie, Strain, Errol, Ottesen, Andrea
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2021
Materias:
Omics Data Sets
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7849694/
https://www.ncbi.nlm.nih.gov/pubmed/33446581
http://dx.doi.org/10.1128/MRA.00906-20
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author Reed, Elizabeth
Sanderson, Robert
Sanderson, Barbara
Ramachandran, Padmini
Commichaux, Seth
Brown, Eric
Zheng, Jie
Strain, Errol
Ottesen, Andrea
author_facet Reed, Elizabeth
Sanderson, Robert
Sanderson, Barbara
Ramachandran, Padmini
Commichaux, Seth
Brown, Eric
Zheng, Jie
Strain, Errol
Ottesen, Andrea
author_sort Reed, Elizabeth
collection PubMed
description Sprouts have been implicated in numerous foodborne illness outbreaks. To better understand baseline microbial profiles of irrigation water and subsequent spent irrigation water of alfalfa sprouts, DNA from water was extracted, sequenced, and annotated with CosmosID and a custom pipeline to provide bacterial, fungal, protist, and antimicrobial resistance gene profiles.
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spelling pubmed-78496942021-02-09 Water Microbiota from a Commercial Alfalfa Sprout Crop over 4 Days of Growth Reed, Elizabeth Sanderson, Robert Sanderson, Barbara Ramachandran, Padmini Commichaux, Seth Brown, Eric Zheng, Jie Strain, Errol Ottesen, Andrea Microbiol Resour Announc Omics Data Sets Sprouts have been implicated in numerous foodborne illness outbreaks. To better understand baseline microbial profiles of irrigation water and subsequent spent irrigation water of alfalfa sprouts, DNA from water was extracted, sequenced, and annotated with CosmosID and a custom pipeline to provide bacterial, fungal, protist, and antimicrobial resistance gene profiles. American Society for Microbiology 2021-01-14 /pmc/articles/PMC7849694/ /pubmed/33446581 http://dx.doi.org/10.1128/MRA.00906-20 Text en https://doi.org/10.1128/AuthorWarrantyLicense.v1 This is a work of the U.S. Government and is not subject to copyright protection in the United States. Foreign copyrights may apply.
spellingShingle Omics Data Sets
Reed, Elizabeth
Sanderson, Robert
Sanderson, Barbara
Ramachandran, Padmini
Commichaux, Seth
Brown, Eric
Zheng, Jie
Strain, Errol
Ottesen, Andrea
Water Microbiota from a Commercial Alfalfa Sprout Crop over 4 Days of Growth
title Water Microbiota from a Commercial Alfalfa Sprout Crop over 4 Days of Growth
title_full Water Microbiota from a Commercial Alfalfa Sprout Crop over 4 Days of Growth
title_fullStr Water Microbiota from a Commercial Alfalfa Sprout Crop over 4 Days of Growth
title_full_unstemmed Water Microbiota from a Commercial Alfalfa Sprout Crop over 4 Days of Growth
title_short Water Microbiota from a Commercial Alfalfa Sprout Crop over 4 Days of Growth
title_sort water microbiota from a commercial alfalfa sprout crop over 4 days of growth
topic Omics Data Sets
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7849694/
https://www.ncbi.nlm.nih.gov/pubmed/33446581
http://dx.doi.org/10.1128/MRA.00906-20
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