The complete chloroplast genome sequence of Sargentodoxa cuneata: genome structure and genomic resources

Sargentodoxa cuneata is used as traditional Chinese medicine. In this study, we report its complete chloroplast genome by Illumina pair-end sequencing. The total chloroplast (cp) genome size was 158,094 bp in length, containing a pair of inverted repeats of 26,132 bp, separated by large single-copy...

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Autores principales: Cui, Xuejun, Wang, Xingong, Wang, Yanjie, Yuan, Qingjun, Shen, Ye, Liu, Linde
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7850361/
https://www.ncbi.nlm.nih.gov/pubmed/33553634
http://dx.doi.org/10.1080/23802359.2020.1863870
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author Cui, Xuejun
Wang, Xingong
Wang, Yanjie
Yuan, Qingjun
Shen, Ye
Liu, Linde
author_facet Cui, Xuejun
Wang, Xingong
Wang, Yanjie
Yuan, Qingjun
Shen, Ye
Liu, Linde
author_sort Cui, Xuejun
collection PubMed
description Sargentodoxa cuneata is used as traditional Chinese medicine. In this study, we report its complete chloroplast genome by Illumina pair-end sequencing. The total chloroplast (cp) genome size was 158,094 bp in length, containing a pair of inverted repeats of 26,132 bp, separated by large single-copy and small single-copy regions of 86,508 bp and 19,322 bp, respectively. The chloroplast genome of S. cuneata encodes 113 different genes, including 79 protein-coding genes, 30 transfer RNAs, and 4 ribosomal RNAs. A total of 84 perfect chloroplast microsatellites were analyzed in the S. cuneata. The majority of the SSRs in this chloroplast genome are mononucleotides (66.67%). The reconstructed phylogeny revealed that S. cuneata was sister to the remaining Lardizabalaceae.
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spelling pubmed-78503612021-02-05 The complete chloroplast genome sequence of Sargentodoxa cuneata: genome structure and genomic resources Cui, Xuejun Wang, Xingong Wang, Yanjie Yuan, Qingjun Shen, Ye Liu, Linde Mitochondrial DNA B Resour Mitogenome Announcement Sargentodoxa cuneata is used as traditional Chinese medicine. In this study, we report its complete chloroplast genome by Illumina pair-end sequencing. The total chloroplast (cp) genome size was 158,094 bp in length, containing a pair of inverted repeats of 26,132 bp, separated by large single-copy and small single-copy regions of 86,508 bp and 19,322 bp, respectively. The chloroplast genome of S. cuneata encodes 113 different genes, including 79 protein-coding genes, 30 transfer RNAs, and 4 ribosomal RNAs. A total of 84 perfect chloroplast microsatellites were analyzed in the S. cuneata. The majority of the SSRs in this chloroplast genome are mononucleotides (66.67%). The reconstructed phylogeny revealed that S. cuneata was sister to the remaining Lardizabalaceae. Taylor & Francis 2021-01-27 /pmc/articles/PMC7850361/ /pubmed/33553634 http://dx.doi.org/10.1080/23802359.2020.1863870 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Cui, Xuejun
Wang, Xingong
Wang, Yanjie
Yuan, Qingjun
Shen, Ye
Liu, Linde
The complete chloroplast genome sequence of Sargentodoxa cuneata: genome structure and genomic resources
title The complete chloroplast genome sequence of Sargentodoxa cuneata: genome structure and genomic resources
title_full The complete chloroplast genome sequence of Sargentodoxa cuneata: genome structure and genomic resources
title_fullStr The complete chloroplast genome sequence of Sargentodoxa cuneata: genome structure and genomic resources
title_full_unstemmed The complete chloroplast genome sequence of Sargentodoxa cuneata: genome structure and genomic resources
title_short The complete chloroplast genome sequence of Sargentodoxa cuneata: genome structure and genomic resources
title_sort complete chloroplast genome sequence of sargentodoxa cuneata: genome structure and genomic resources
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7850361/
https://www.ncbi.nlm.nih.gov/pubmed/33553634
http://dx.doi.org/10.1080/23802359.2020.1863870
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